LOC103027391 (crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059)


Basic Information

Item Value
gene id LOC103027391
gene name crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4771793 ~ 4805667 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677874.1
CGCGCCTGCTGCTGGGTGAGAGTAACGTTAGCAGAGCTCAGACCGCCTCCGCCGCGGAGAGAGGGAGCAGGAGGCGCGGGGTGGGAGGAAGACATGGCTGGGAGGAGCTTGGGGAAGTATAAACTTGGATGAGTTTAGGCTGAGGGTAAAAAGCCTCGCCGCGCTTAAAAATCATGCCAAAACCGGAGCGGAGGACACGAGCAGCCGGCCACTTCGCCTCGGAACTCGATGGATATTCCCTGAAACGGAGCTTCTGTGACTGAGGGCTGCGGGAACAACACACACGCCCCGGGTCCCGGAGCCTCGCATCAGCCGCGgagcagcgagagagagagcgcgggAGCTCCACAGCGGGCAAGCCGAGCCAGAGCAGCCCAATCCCCGTAAACACACAATGGGATTAGCGCTGGAGCGGAGGAGCAGAGCTTCCAGCCCATGTGGCTCaaacacctccaccaccacaaACTTAACACTACTGTTCCTCACACTgagtgctccagcagtgctgtcCTTCACCCCGATGGCTATGGTGTATCCACAAGATCCAGCCCTGCTGATTGGTTCCAGTCTCACGGCCACATGTTCGGTCAGTGCTGATCACGGTCTGCATGCTGGCTCTCTTTACTGGACACTAAACGGTAAACGCCTCCACAGCAGCACCTACAGCATCCTGAGCCCCACCGTCCTCAGCGTCACTCTGACCAACCTGAGCGGCTCCCGGCAGCGCTCCGGCGACAACCTGGTGTGCCACGGCGGCGGCGGCCACGTGCTGGCCGGCTCCTGCCTCTATGTGGGCATGCCGCCTGAGAAGCCCGTCAACCTTACCTGTTGGTCCAGGAACACAAAAGACCTGACCTGCCGGTGGGCTCCGGGGGGCCAGGGGGAGACTTTCATTAAGACCAaatacacactcaaatacaaACTCAGGTGGTACGGGCAGGAGAAGGAGTGTGAGGACTACAGCGCGGGGCAGCCCTACACGTGCTACATCCCACGCGACCTCGCCCTCTTCACACCTTACGAGATCTGGGTGGAGGCCTCCAACCAGCTGGGAAGCGCCACCTCGGACGTCATCAGCCTGGATATCCTAGACGTGGTGACGACGGACCCTCCGGCAGACGTCCACGTGAGCCGGGTGGGTGACCTGGAGGACCAGCTGACTGTTCGCTGGGGAACGCCACCGGCCCTCAAAGACTTCCTCTTCCAGGCCAAGTACCAGATCCGCTACAGGCTGGAGGACAGCTCTGACTGGAAGGTGGTGGACGACATGGGGAATCAGACGTCCTGCAGGCTGGCCGGCCTCAGGCCCGGGACGGTCTACTTCGTCCAGGTTCGCTGTAACCCCGTGGGAATTCTGGGCTCCAGAAAGGCCGGAATCTGGAGCGACTGGAGCCACCCGACCGCAGCCTCCACACCGCACAGTGAGCGGTTGCTGGCGGGCTCGTGCGACTCCAAGGCGGGGCAGCAGAACTCAACGCTGCGACGGGACCTCAAGCAGTTCTTCGGCTGGGTCCGCAAGCGAGCATACGGATGCAGCGGCATGAGCATCAAACTATATGACCAGTGGCGGGTCTGGCTGCAGAAATCCCACAAAACCCGGAACCAGGTTCTTCAAGGAGATAAATCATAGCACGTCGCTCCTGGCTGGATGGGACTCTTGACGAGGGCAGCACCGCAGAAGGGCTTCGCTTCCCCCACCCTCCACCACCCAGCCCAAGCCAGCTGGAAGTTCTACCACAGCAGGACCTGAGGAGAAACGTTAAAACAGAGCTACGACTGTACGCCGGACCCTGCTTTAAACCACGCCttactttctttttgttttttgttgttttttttttcaatagagGAAagcaatcttattttttttttatttgcgaCTGACCATATGGAGGATATATCTCGGCGAGAATGTGCTCGGTGGAGCACACCGGGGAGCGATTCATCAAGCTGCAATTTGCACATTTGCTCCAAGGAGGACTTTCCTCCCacgtttctgtgtttctgtttctgtgacGCTTCCAGTCTGGTTCCTTCATTCACGTTAAAGAGACTACAGGACCAGGCAGAGGTGAGACTACAGGACCAGGCAGAGGTGAGACTACAGGACCAGGCAGAGGTGAGACTACAGGACCAGGCAGAGGTGAGGTGCCAGACAGAAAAAGGAGACAAGCAGAACCCTCTGTTTTGGCTTCGATACTTCAGGACTTCAGGACTTCAGGACTGGCCTTGATGAACATGATGAAACAAAGCCTTACCAAAGATCCAGCGTGAACGTTTAGCACATTTTCAGCACAGATTTCTGTTCAGTTCTCTGACTGCACACACAGGTTCTGAGTAGGTGGAATTCTTCACAgtggagaaaaaaggaggaCGAAGACGTTAGATAAGCCAAAATGCCTTGGAAACCAAATGAAACATCTAACGAATATAAGCGATGGTTCAGCAAAAATACTGGCTTTACTGTGGATGTGCATAAATCAGCTAAGGTGTGTTGAAGTAGACatatacaataattataataataatactatttaaTACTAACAACAATCAAACAACACTGATCTGTGAGCTGAATTGGCAGTGAGTGTAGTCAGatcttaacaaaaaaacaagctttGGCTAGATCTAGTTTtgatgactgtatataaagtcAAACCTGCAACATCTAacttaggctatgttcacattaccaggctgaagtgactcacaTCTGATTTtctgctcaatgtggctcagaattgattttt

Function

symbol description
crlf1a Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in diencephalon; hypothalamus; optic tectum; and telencephalon. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).
crlf1 Enables cytokine binding activity. Contributes to ciliary neurotrophic factor receptor binding activity and cytokine activity. Involved in negative regulation of neuron apoptotic process; positive regulation of cell population proliferation; and positive regulation of tyrosine phosphorylation of STAT protein. Part of CRLF-CLCF1 complex. Implicated in cold-induced sweating syndrome 1.

NR:

description
PREDICTED: cytokine receptor-like factor 1

GO: NA

KEGG:

id description
K24481 CRLF1; cytokine receptor-like factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677874.1 True 2750 mRNA 0.54 10 4771793 4805667

Neighbor

gene id symbol gene type direction distance location
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding downstream 4500 4761753 ~ 4767293 (-)
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding downstream 23040 4738988 ~ 4748753 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding downstream 44265 4723386 ~ 4727528 (-)
LOC103037397 LOC108428887,LOC107681713,LOC107722123,LOC107560776 coding downstream 226305 4530536 ~ 4545488 (-)
LOC103036885 LOC103036885,LOC108428857 coding downstream 285808 4484233 ~ 4485985 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding upstream 225752 5031419 ~ 5045009 (-)
ccdc24 NA coding upstream 761517 5567184 ~ 5598775 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding upstream 819192 5624859 ~ 5898800 (-)
LOC103034342 NA coding upstream 1171600 5977267 ~ 5997977 (-)
LOC111194226 NA coding upstream 1215431 6021098 ~ 6022596 (-)
LOC111194275 NA non-coding downstream 17466 4752573 ~ 4754327 (-)
G139011 NA non-coding downstream 64268 4706213 ~ 4707525 (-)
G138919 NA non-coding downstream 350198 4420864 ~ 4421595 (-)
G138913 NA non-coding downstream 374861 4396090 ~ 4396932 (-)
G138910 NA non-coding downstream 420667 4332394 ~ 4351126 (-)
G139027 LOC107602621,LOC108268010,LOC107749088,LOC105907002,LOC106574506,LOC107678690,LOC102777581 non-coding upstream 15536 4821203 ~ 4838073 (-)
G139029 NA non-coding upstream 30115 4835782 ~ 4836531 (-)
G139003 NA non-coding upstream 33199 4838866 ~ 4854692 (-)
G139043 NA non-coding upstream 199825 5005492 ~ 5006291 (-)
G139040 NA non-coding upstream 222253 5027920 ~ 5028705 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 433596 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 910437 3847722 ~ 3861356 (-)
G138708 NA other downstream 938123 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1596440 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1657107 3095601 ~ 3114686 (-)
G139074 NA other upstream 470439 5276106 ~ 5276468 (-)
G139105 NA other upstream 524411 5330078 ~ 5330805 (-)
G139489 NA other upstream 1203386 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1216942 6022609 ~ 6054733 (-)
G139487 NA other upstream 1499302 6304969 ~ 6374709 (-)

Expression


Co-expression Network