ccdc24


Basic Information

Item Value
gene id ccdc24
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5567184 ~ 5598775 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677888.1
CTTTTCCAAAGCTGTTATTCTAGCTATTCCATGCAGTTTCATAATATTCAGAGCAATATCtactttaattcattttattctaCTTTATACTTTTATTCTCCAACAATCCTAATGAGAGACGTCTGTAATCTCGCGAGATTAGCTCCATGGCAACGAGACTGTTTACACTGGCTAGAGGAAGCAGCGAGGAGAGAGATTGATGGAGAGCTTTCGAGTTCAGCAGTCTCTGTGGGACATGGTAAAGGAGTATGTCCCGGATTCGGAGCTTGTGGAGGTTCGTGCAGCGCTCGGGGGTGGACTGATAGACCTGTACCTGGAGATTTACTCAGAGGTTCAGATGTTGGAGCGGATTTGGAGAAATGTGCAGGGTGGCACACCCCGGACTCCCCGGACTCCTTTAGCCGATCCCCCTGCTGTGAAGGAGCTGCTGCGGGCGgagctccagctgctgctgctgaacctgCGGGAGAGAGCCGCCAGACTGGGAAGGGATGGAGATGAAGTCGTGTCCCGGTATAATCACAGGGTGGTGAGTTATGCACTTGCTGGCAGAACAGGAAGCCCAGACAGCCAGTGTGAGACTGCAGCGCCATCCAGCAGCCCTGAACCCAGTCTCAGCCGCTGTGACAGCAGATCAAGCTCACGTCTCTCCTCACGCTCTAGTGAAGATGATATTGAAGCTTTGAGGGAAAAATTAAACGTCACCCACATAGACGAGGTTGTGTCAAATCTCAAATCAATTTTTACTGACGAATGTGAGGCTTTGAAAGAGGATGTACAGTTCCTCCAGGAGAGTGTGAAGCTGGAATATCAGAAGCAGAGGGAACCTGAGTTGGTGGAGCCCACTCTAACAGAGCTTAAAGAGGAGCGGCGCATCATCCAGAGAGACCTGAACGACCAGAGTTTGATGAGTGAAGCCTCAGATAAGCCGAAGCCCCGCTGCTGTCCCGCATCCAGCAGgTTAAAAGACTTGCCTACAACTCACTCAACCTCACTGGTGCCACCCGGCATAAATCATCTTTACCCAAACCCTTCTCCTCCTGACATCAGCAGACCCGCTCATACAATCCAGCCCTGGCACAGAACACCCCTTAAGCTCATGCAGCCTCTGCACTCGTCCCCAGCTGGAGGTCAGACTCATAAACTCAACCCAGAGCCCTCCTGCAACAGTCTGACCCACCAGGCTTCCACAGCCTCCACCACAGTGGATCACCCACTGCCACTAAGCACCGCTGCTACATCCACGGCTGTGCGGAGGACGTACAGCTGCAGCATGGAGCCCAGAGAGGAAGCACTCCAAGCCTCCAGATTGACCCCGTCTGCAGGCCCAGACTGCAGGCAGCTATGTGGGTCCTCTGAGGCTGGCACCTTCATTCACTCCCAACAGCTGGGCCTGCGGGCAAAGACAGCCGGGACCGTGGCCCTTATTCCCGCTCCCCCTGCAGTGCAGAAAGTAGCCAGCAGGGGGCAGCGGGCAAACAGACAGATGGCTCTTCTTCAAGCCTCAAGCTCCTGAGAACTGGACACTGCTGCACAGTTAAAGGTTAAGGTATACTGAGGAACTTTTAGAAATTCTTAATTTAAAACGGTGAAGGAACCCCTTAAGGTGATTTAAGGAACCAAGACCTTCAAGAGCACCTGAAACCACTTTAAGATTCCTCCACAGTTTTACATTGAAGAACCCCTAAAAGTTCCTGACAGATCTCATACTTTTAACTGTGTGGACCAAGCGTCTCTGCTAACGATGTAAAACAAGGACAAATGTTCAGAAGTCTTGGACTGGGGACACTAAATTCACCTAATACAGATGAGCATCGTGGACCTTGAAGCTTGCTTGAATTGGTCAATGGCCTTCATAACTGTAATAATggtaataaatacaattataatttta
>XM_022677889.1
gatgaaaacataattttgtcccacccctaattcTGATGGCAGTTCAGATCATAAAAACACGGGTTTGGTATGAGAGCTGGTCTGAGAGCTCGGGGGTGGGGGTACAGGGCTGGTTTAACGTTCTCCATGCTCTGCTGGTGCTTTGAAGTGTAGTTCTGGAGGAGGGGGTGCAGGGTGGGTTTGAGGCCAGGTGTGAAGGGCAGTAGTTGGGTTCAGGCTGTGTTCCTCACTGTGATTATTCCTACTGTTTGCCTTTCCTCCTTCTGTTTTTCTCATGTCTGCTGGCTTGCAGTCACATGCGTGTGGATCAGGTCCAGATTCTGAAAGTTTCCTGCCTCTGCAGACGCCGAGTGTTTAACTTGGGAAGAAATTCTACCCAACTGACGGCACATATGGTGCCTCTCATGTAGTGGCGACTATTGTCCAGATTTGAGGGAACATAAGGTTCAGATGTTGGAGCGGATTTGGAGAAATGTGCAGGGTGGCACACCCCGGACTCCCCGGACTCCTTTAGCCGATCCCCCTGCTGTGAAGGAGCTGCTGCGGGCGgagctccagctgctgctgctgaacctgCGGGAGAGAGCCGCCAGACTGGGAAGGGATGGAGATGAAGTCGTGTCCCGGTATAATCACAGGGTGGTGAGTTATGCACTTGCTGGCAGAACAGGAAGCCCAGACAGCCAGTGTGAGACTGCAGCGCCATCCAGCAGCCCTGAACCCAGTCTCAGCCGCTGTGACAGCAGATCAAGCTCACGTCTCTCCTCACGCTCTAGTGAAGATGATATTGAAGCTTTGAGGGAAAAATTAAACGTCACCCACATAGACGAGGTTGTGTCAAATCTCAAATCAATTTTTACTGACGAATGTGAGGCTTTGAAAGAGGATGTACAGTTCCTCCAGGAGAGTGTGAAGCTGGAATATCAGAAGCAGAGGGAACCTGAGTTGGTGGAGCCCACTCTAACAGAGCTTAAAGAGGAGCGGCGCATCATCCAGAGAGACCTGAACGACCAGAGTTTGATGAGTGAAGCCTCAGATAAGCCGAAGCCCCGCTGCTGTCCCGCATCCAGCAGgTTAAAAGACTTGCCTACAACTCACTCAACCTCACTGGTGCCACCCGGCATAAATCATCTTTACCCAAACCCTTCTCCTCCTGACATCAGCAGACCCGCTCATACAATCCAGCCCTGGCACAGAACACCCCTTAAGCTCATGCAGCCTCTGCACTCGTCCCCAGCTGGAGGTCAGACTCATAAACTCAACCCAGAGCCCTCCTGCAACAGTCTGACCCACCAGGCTTCCACAGCCTCCACCACAGTGGATCACCCACTGCCACTAAGCACCGCTGCTACATCCACGGCTGTGCGGAGGACGTACAGCTGCAGCATGGAGCCCAGAGAGGAAGCACTCCAAGCCTCCAGATTGACCCCGTCTGCAGGCCCAGACTGCAGGCAGCTATGTGGGTCCTCTGAGGCTGGCACCTTCATTCACTCCCAACAGCTGGGCCTGCGGGCAAAGACAGCCGGGACCGTGGCCCTTATTCCCGCTCCCCCTGCAGTGCAGAAAGTAGCCAGCAGGGGGCAGCGGGCAAACAGACAGATGGCTCTTCTTCAAGCCTCAAGCTCCTGAGAACTGGACACTGCTGCACAGTTAAAGGTTAAGGTATACTGAGGAACTTTTAGAAATTCTTAATTTAAAACGGTGAAGGAACCCCTTAAGGTGATTTAAGGAACCAAGACCTTCAAGAGCACCTGAAACCACTTTAAGATTCCTCCACAGTTTTACATTGAAGAACCCCTAAAAGTTCCTGACAGATCTCATACTTTTAACTGTGTGGACCAAGCGTCTCTGCTAACGATGTAAAACAAGGACAAATGTTCAGAAGTCTTGGACTGGGGACACTAAATTCACCTAATACAGATGAGCATCGTGGACCTTGAAGCTTGCTTGAATTGGTCAATGGCCTTCATAACTGTAATAATggtaataaatacaattataatttta

Function

NR:

description
coiled-coil domain-containing protein 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677888.1 False 1894 mRNA 0.50 9 5567184 5598775
XM_022677889.1 True 2007 mRNA 0.51 8 5567184 5596954

Neighbor

gene id symbol gene type direction distance location
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 522175 5031419 ~ 5045009 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 761517 4771793 ~ 4805667 (-)
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding downstream 799891 4761753 ~ 4767293 (-)
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding downstream 818431 4738988 ~ 4748753 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding downstream 839656 4723386 ~ 4727528 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding upstream 26084 5624859 ~ 5898800 (-)
LOC103034342 NA coding upstream 378492 5977267 ~ 5997977 (-)
LOC111194226 NA coding upstream 422323 6021098 ~ 6022596 (-)
LOC103029970 NA coding upstream 604033 6202808 ~ 6205849 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 840874 6439649 ~ 6473720 (-)
G139435 slc6a9,LOC107739827 non-coding downstream 15122 5545244 ~ 5552062 (-)
G139155 NA non-coding downstream 111162 5455746 ~ 5456022 (-)
G139150 NA non-coding downstream 124278 5442556 ~ 5442906 (-)
G139149 LOC108415780 non-coding downstream 124757 5441786 ~ 5442427 (-)
G139110 NA non-coding downstream 221150 5344829 ~ 5346034 (-)
G139451 NA non-coding upstream 16014 5614789 ~ 5616029 (-)
G139457 NA non-coding upstream 72573 5671348 ~ 5671588 (-)
G139472 NA non-coding upstream 198716 5797491 ~ 5799470 (-)
G139488 atp6v0b,LOC102788333 non-coding upstream 306921 5905696 ~ 5927854 (-)
LOC111194292 NA non-coding upstream 370177 5968952 ~ 5970326 (-)
G139105 NA other downstream 236379 5330078 ~ 5330805 (-)
G139074 NA other downstream 290716 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1228987 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 1705828 3847722 ~ 3861356 (-)
G138708 NA other downstream 1733514 3832721 ~ 3833670 (-)
G139489 NA other upstream 410278 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 423834 6022609 ~ 6054733 (-)
G139487 NA other upstream 706194 6304969 ~ 6374709 (-)
G139587 NA other upstream 818610 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 966128 6564903 ~ 6689723 (-)

Expression


Co-expression Network