LOC103031246


Basic Information

Item Value
gene id LOC103031246
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6016233 ~ 6189636 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677916.1
tttcttcataattcgtaattttgattgaagtttcgtaaaacaaagttttcagagtcaatcattcagattcagacacctcGAGAGGGAGGGGCACGGGCATAGCGGGGGACATGCAGCACGCTTCACTAGAGAAAAAAGCGCAGCACACGACCGGGCAGCGCTTCAGCCGACTAGCAGAGACCCAAGATGCCGTGGGAGTCGAGCGACTGCCCTGAAGGTGAATATGGAAGGGTGGTTAGAGTTTCCCCCGGTCTCCAGTAAAgtggagcagcagaagatccagctctgatcagcagctccacacctctGTACTCAGACTGCTCTGCTGGAGGAACACCATCAGCTCACCTGCTGCAGAATTGAATCCTATACTGTTCCAAGTCTTATTCTGATCCCAGTGTCAACGTTCCTAACCTGATAAGGTTTAGCTGTACAGATACAGTCAGAAGATTTCACCAACAATTTTAAGATGCTGAACGAAGAGGAGAACATGGCATCCAGTGAAATCTCCAATACTCAACAAACGCCCTctcctacacctcacacacaaaTGCAGGAAAGTAAAGGCAAGAAGaaaactcaccactgctcagactgtgggaagagctttactGCACAGAGTTATCTCCAAATacaccaacgcattcacacaggagagaaaccgtacaCGTGTTCAGATTGTGGAAAGAGCTTTgctacacagagtaatctccagcgacaccagcgcattcacacaggagagaagccgtatcagtgttcagactgtggaatgGGTTTTAAAATTCAAAGTCATCTCAaagaacaccagcgcattcacactggagaaaaaccgtatcactgttcagagtgtgggaaaagttttactcaacagaatATGCTTAcaagacaccagcgcattcacactggagagaaaccatatttctgctcagactgtgggaagagttttaatcgtcAGAGTCATCTCCAATTACACCAGCTCGTTCACACTGGACataaaccgtatcactgctcagaatgTGCAAAGAGCTTTACTTGTCAGAGTCATCTCCAGCGACAtctgcgcattcacactggagagaaaccgtatcagtgctcagagtgtgggataAGTTTTAAAATTCAGAGTCATCTCAaagaacaccagcgcattcacactggagagaaaccgtatcactgctcagactgtgggaaaagttttactcaacagagtatcCTTacacaacaccagcgcattcacactggagagaaaccatattactgctcagactgttcAGTGAGCTTCAGGCATTTACCAACACTCAAGAAACACAAGTGCATAAAGACCAGTCTTGAAAATGGGCAGTGACTCATCTAAAACCTTTCCAGATCCTGTATATAtatcctgtatatatatatatatgtatatatacatgtgCCAAATGTCATGGTACTGGAACTAGTCATATTGTAACAGTCAACTTAGTGTTGTGTCTATAAGTCAAAGTTCATCTATAGATTTATACGTATAGTGGGACATCAATCACTAGTGAGACATACAGAACGAGAATTGTGTAGGATAGAAAAGTGATCTGCTGTGGTACACTATGAAgaggaattagtgccaaattaaaaagtaaacactAGTGTggggaaaaatgtaaatgcaatccgCAAAATGCATTGTTTTTCCATTCTCACATGAAGAATAAGcgccaaaatgaaatgcaaaaccattattacattacatttcagtgcacttgatctctttattgaaaaacaatacaTACCAATTAGCATTTTCCAAACCAAAAGCTGAATCAGTGccagaattaaataaaatgcaccTTGAAATGTAATCAAGGCACAGCTGTATTACTTTTCACCATAAGGTCCTTTAAACATGAACTCCtcctttaaatgtaatatttaaaagcGGATATGCGGAAAACATGCCACAATGAAAAGTAATAGCTCCAGTACACTGCTTAAATGTCACCCAATCTCTGAACAGAATAACAGTGTGTGGATttgtatttaaagaaaaaatgcttAATTTGTGTCAGAGTTGCACTTAAAATGCAGTCACCTCAACTGCATTGTATTCCACTGTGTGACGCTGCAAACGTGCAAATCAAATCATAATGCACATCGATTGCATTCCGTCTAGGAGCAGCAAAAATGTTATGCaatcactgtccaatcagagtGCTTACCCGAAATTGGGGCGGAGCTAAGACACTAGTCAGAAGCAATTGCTCGTAGCTATACATTAGGTCCGAAGAAATGTCTTTCCGTGACAGGATAAAAGAGGAAATTAAACACTCAAATGCAACAAATTAGTGATGGGAATTCTGGCTCTTTCAGCTCCCAAGTGGCTCCTTAGATTTTTTGGTTGCTTAATTCAATTTATTACCAAATGAATTACTAGAGTACAAACATACATTAtttgaaatatgtattatttatatggctttatttatacaaaaatgaaacaaacagCACTGAACAACATCAACAAAGTGTcactcaacaaaataaaaaa
>XM_022677917.1
tgatcagcagctccacacctctGTACTCAGACTGCTCTGCTGGAGGAACACCATCAGCTCACCTGCTGCAGGTGAATATGGAAGGGTGGTTAGAGTTTCCCCCGGTCTCCAGTAAAgtggagcagcagaagatccagctctgatcagcagctccacacctctGTACTCAGACTGCTCTGCTGGAGGAACACCATCAGCTCACCTGCTGCAGAATTGAATCCTATACTGTTCCAAGTCTTATTCTGATCCCAGTGTCAACGTTCCTAACCTGATAAGGTTTAGCTGTACAGATACAGTCAGAAGATTTCACCAACAATTTTAAGATGCTGAACGAAGAGGAGAACATGGCATCCAGTGAAATCTCCAATACTCAACAAACGCCCTctcctacacctcacacacaaaTGCAGGAAAGTAAAGGCAAGAAGaaaactcaccactgctcagactgtgggaagagctttactGCACAGAGTTATCTCCAAATacaccaacgcattcacacaggagagaaaccgtacaCGTGTTCAGATTGTGGAAAGAGCTTTgctacacagagtaatctccagcgacaccagcgcattcacacaggagagaagccgtatcagtgttcagactgtggaatgGGTTTTAAAATTCAAAGTCATCTCAaagaacaccagcgcattcacactggagaaaaaccgtatcactgttcagagtgtgggaaaagttttactcaacagaatATGCTTAcaagacaccagcgcattcacactggagagaaaccatatttctgctcagactgtgggaagagttttaatcgtcAGAGTCATCTCCAATTACACCAGCTCGTTCACACTGGACataaaccgtatcactgctcagaatgTGCAAAGAGCTTTACTTGTCAGAGTCATCTCCAGCGACAtctgcgcattcacactggagagaaaccgtatcagtgctcagagtgtgggataAGTTTTAAAATTCAGAGTCATCTCAaagaacaccagcgcattcacactggagagaaaccgtatcactgctcagactgtgggaaaagttttactcaacagagtatcCTTacacaacaccagcgcattcacactggagagaaaccatattactgctcagactgttcAGTGAGCTTCAGGCATTTACCAACACTCAAGAAACACAAGTGCATAAAGACCAGTCTTGAAAATGGGCAGTGACTCATCTAAAACCTTTCCAGATCCTGTATATAtatcctgtatatatatatatatgtatatatacatgtgCCAAATGTCATGGTACTGGAACTAGTCATATTGTAACAGTCAACTTAGTGTTGTGTCTATAAGTCAAAGTTCATCTATAGATTTATACGTATAGTGGGACATCAATCACTAGTGAGACATACAGAACGAGAATTGTGTAGGATAGAAAAGTGATCTGCTGTGGTACACTATGAAgaggaattagtgccaaattaaaaagtaaacactAGTGTggggaaaaatgtaaatgcaatccgCAAAATGCATTGTTTTTCCATTCTCACATGAAGAATAAGcgccaaaatgaaatgcaaaaccattattacattacatttcagtgcacttgatctctttattgaaaaacaatacaTACCAATTAGCATTTTCCAAACCAAAAGCTGAATCAGTGccagaattaaataaaatgcaccTTGAAATGTAATCAAGGCACAGCTGTATTACTTTTCACCATAAGGTCCTTTAAACATGAACTCCtcctttaaatgtaatatttaaaagcGGATATGCGGAAAACATGCCACAATGAAAAGTAATAGCTCCAGTACACTGCTTAAATGTCACCCAATCTCTGAACAGAATAACAGTGTGTGGATttgtatttaaagaaaaaatgcttAATTTGTGTCAGAGTTGCACTTAAAATGCAGTCACCTCAACTGCATTGTATTCCACTGTGTGACGCTGCAAACGTGCAAATCAAATCATAATGCACATCGATTGCATTCCGTCTAGGAGCAGCAAAAATGTTATGCaatcactgtccaatcagagtGCTTACCCGAAATTGGGGCGGAGCTAAGACACTAGTCAGAAGCAATTGCTCGTAGCTATACATTAGGTCCGAAGAAATGTCTTTCCGTGACAGGATAAAAGAGGAAATTAAACACTCAAATGCAACAAATTAGTGATGGGAATTCTGGCTCTTTCAGCTCCCAAGTGGCTCCTTAGATTTTTTGGTTGCTTAATTCAATTTATTACCAAATGAATTACTAGAGTACAAACATACATTAtttgaaatatgtattatttatatggctttatttatacaaaaatgaaacaaacagCACTGAACAACATCAACAAAGTGTcactcaacaaaataaaaaa
>XM_022677918.1
caGTAGCAGACTGTTGGAGGATAAGGTGAATATGGAAGGGTGGTTAGAGTTTCCCCCGGTCTCCAGTAAAgtggagcagcagaagatccagctctgatcagcagctccacacctctGTACTCAGACTGCTCTGCTGGAGGAACACCATCAGCTCACCTGCTGCAGAATTGAATCCTATACTGTTCCAAGTCTTATTCTGATCCCAGTGTCAACGTTCCTAACCTGATAAGGTTTAGCTGTACAGATACAGTCAGAAGATTTCACCAACAATTTTAAGATGCTGAACGAAGAGGAGAACATGGCATCCAGTGAAATCTCCAATACTCAACAAACGCCCTctcctacacctcacacacaaaTGCAGGAAAGTAAAGGCAAGAAGaaaactcaccactgctcagactgtgggaagagctttactGCACAGAGTTATCTCCAAATacaccaacgcattcacacaggagagaaaccgtacaCGTGTTCAGATTGTGGAAAGAGCTTTgctacacagagtaatctccagcgacaccagcgcattcacacaggagagaagccgtatcagtgttcagactgtggaatgGGTTTTAAAATTCAAAGTCATCTCAaagaacaccagcgcattcacactggagaaaaaccgtatcactgttcagagtgtgggaaaagttttactcaacagaatATGCTTAcaagacaccagcgcattcacactggagagaaaccatatttctgctcagactgtgggaagagttttaatcgtcAGAGTCATCTCCAATTACACCAGCTCGTTCACACTGGACataaaccgtatcactgctcagaatgTGCAAAGAGCTTTACTTGTCAGAGTCATCTCCAGCGACAtctgcgcattcacactggagagaaaccgtatcagtgctcagagtgtgggataAGTTTTAAAATTCAGAGTCATCTCAaagaacaccagcgcattcacactggagagaaaccgtatcactgctcagactgtgggaaaagttttactcaacagagtatcCTTacacaacaccagcgcattcacactggagagaaaccatattactgctcagactgttcAGTGAGCTTCAGGCATTTACCAACACTCAAGAAACACAAGTGCATAAAGACCAGTCTTGAAAATGGGCAGTGACTCATCTAAAACCTTTCCAGATCCTGTATATAtatcctgtatatatatatatatgtatatatacatgtgCCAAATGTCATGGTACTGGAACTAGTCATATTGTAACAGTCAACTTAGTGTTGTGTCTATAAGTCAAAGTTCATCTATAGATTTATACGTATAGTGGGACATCAATCACTAGTGAGACATACAGAACGAGAATTGTGTAGGATAGAAAAGTGATCTGCTGTGGTACACTATGAAgaggaattagtgccaaattaaaaagtaaacactAGTGTggggaaaaatgtaaatgcaatccgCAAAATGCATTGTTTTTCCATTCTCACATGAAGAATAAGcgccaaaatgaaatgcaaaaccattattacattacatttcagtgcacttgatctctttattgaaaaacaatacaTACCAATTAGCATTTTCCAAACCAAAAGCTGAATCAGTGccagaattaaataaaatgcaccTTGAAATGTAATCAAGGCACAGCTGTATTACTTTTCACCATAAGGTCCTTTAAACATGAACTCCtcctttaaatgtaatatttaaaagcGGATATGCGGAAAACATGCCACAATGAAAAGTAATAGCTCCAGTACACTGCTTAAATGTCACCCAATCTCTGAACAGAATAACAGTGTGTGGATttgtatttaaagaaaaaatgcttAATTTGTGTCAGAGTTGCACTTAAAATGCAGTCACCTCAACTGCATTGTATTCCACTGTGTGACGCTGCAAACGTGCAAATCAAATCATAATGCACATCGATTGCATTCCGTCTAGGAGCAGCAAAAATGTTATGCaatcactgtccaatcagagtGCTTACCCGAAATTGGGGCGGAGCTAAGACACTAGTCAGAAGCAATTGCTCGTAGCTATACATTAGGTCCGAAGAAATGTCTTTCCGTGACAGGATAAAAGAGGAAATTAAACACTCAAATGCAACAAATTAGTGATGGGAATTCTGGCTCTTTCAGCTCCCAAGTGGCTCCTTAGATTTTTTGGTTGCTTAATTCAATTTATTACCAAATGAATTACTAGAGTACAAACATACATTAtttgaaatatgtattatttatatggctttatttatacaaaaatgaaacaaacagCACTGAACAACATCAACAAAGTGTcactcaacaaaataaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677916.1 True 2521 mRNA 0.41 3 6183086 6189636
XM_022677917.1 False 2375 mRNA 0.40 3 6016233 6189636
XM_022677918.1 False 2329 mRNA 0.40 3 6185502 6189636

Neighbor

gene id symbol gene type direction distance location
LOC111194284 NA coding upstream 3928 6011579 ~ 6012305 (+)
LOC103047673 NA coding upstream 12321 6001986 ~ 6003912 (+)
LOC111194285 NA coding upstream 50129 5964234 ~ 5966104 (+)
LOC111194287 NA coding upstream 62542 5952966 ~ 5953691 (+)
LOC111194288 NA coding upstream 70540 5944123 ~ 5945693 (+)
LOC103030609 NA coding downstream 1821 6191457 ~ 6224897 (+)
LOC111194230 NA coding downstream 37904 6227540 ~ 6232060 (+)
LOC111194283 NA coding downstream 37906 6227542 ~ 6246723 (+)
LOC103029132 NA coding downstream 59889 6249525 ~ 6253963 (+)
nmnat2 nmnat2,LOC106569066 coding downstream 287796 6477432 ~ 6504960 (+)
G139219 NA non-coding upstream 30160 5985416 ~ 5986073 (+)
G139170 NA non-coding upstream 400344 5614294 ~ 5615889 (+)
G139139 NA non-coding upstream 573268 5442556 ~ 5442965 (+)
LOC111194278 NA non-coding upstream 606119 5407208 ~ 5410114 (+)
G139117 NA non-coding upstream 663508 5352155 ~ 5352725 (+)
G139224 NA non-coding downstream 1729 6191365 ~ 6273750 (+)
G139230 NA non-coding downstream 13176 6202812 ~ 6204652 (+)
G139301 NA non-coding downstream 216823 6406459 ~ 6408590 (+)
G139298 NA non-coding downstream 247982 6437618 ~ 6443166 (+)
G139326 NA non-coding downstream 348413 6538049 ~ 6549440 (+)
G139154 NA other upstream 560229 5455480 ~ 5456004 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other upstream 1009227 4889873 ~ 5007006 (+)
LOC103026815 LOC108428843 other upstream 1293459 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 1307570 4703346 ~ 4708663 (+)
G138839 NA other upstream 1770369 4237609 ~ 4245864 (+)
LOC103028159 NA other downstream 45798 6235434 ~ 6242571 (+)
G139282 NA other downstream 77180 6266816 ~ 6267387 (+)
dhx9 dhx9 other downstream 528602 6718238 ~ 6742069 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other downstream 851924 7041560 ~ 7046298 (+)
LOC103030954 NA other downstream 2971697 9161333 ~ 9162523 (+)

Expression


Co-expression Network