LOC103047673


Basic Information

Item Value
gene id LOC103047673
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6001986 ~ 6003912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677919.1
ATTGGATCAGATCAAGTAACAGATTCATTGTGATGTATTGATTGGAcatgttctaatagtttcaGCGCTTTGGACAGATGTTTGCTGTGGTTTAAAATGAAGACTGTATTCTCTGTAGGTGAATATGGAAGGGTGGTTAGAGTTTCCCCCGGTCTCCAGTAAAgtggagcagcagaagatccagctctgatcagcagctccacacctctGTACTCAGACTGCTCTGCTGGAGGAACACCATCAGCTCACCTGCTGCAGaatgaATGCTGTCCTGCTCCAAGTCTTCACCTGATCTCTTGCCAACTTTCCTACTTGGATAAAGTTTAGCTTTACAGACACAATCTAGAAAATGTTACAAAGATGTTAAGATGCTGAACGAAGAGGAAAGCATGGAATCCAGCAAAATCTCAAAAACTCAACCAATGCAGAAAAATACAGCCACTGGAGATAAACCATATCACTGTTctgactgtgggaagagttttaatcaaaaGAATcatctcaaaacacaccagcgcattcacactggagagaaaccatttcactgctcagactgtgggaagtgTTTTACTCAACAAATTAATCttcaacaacaccagcgcattcacagtGGAGAGAAACcttatcactgttcagactgtgggaagagattTGCTACAGAGGGTAACCTTaaaatacatcagcgcattcacactggagagaaaccgtatcagtgctcagagtgtgggaagagttttaatcatcaAACTCATCTCAgaattcaccagcgcattcacacaggagtaaAACCATATCAGTGTttagactgtggaaagagttttagtcATCACAGTACTCTCCAGAAtcaccagcacattcacactggagaaaaaccctATTATTGTTCAGAGTGTGGGAGGTTTTTTAGTCTTCAGACTCACCTCCAGAAACATCagctcattcacactggagagaaaccgtataaTTGCTCAgattgtgggaagagttttaatcaacggAGCCATCTCCAACAgcaccagcacattcacactggagagaaaccgtatcgctgttcagactgtgggaagagttttactagacAGAGTTATTTCCAACAACAcctgcgcattcacactggagagaaaccgtattactgctcagagtgtgcaGAGAGATTCAGGTATTTACAGTCATTCAAGAAACACAAGTGCAAAAAGAGTAGTCATGGAAATGGACAGTGACACACCTAAAACAATTCCAGAAGGAAACTTCTTGCTTTAAACGAAGCATATTTATTAACAGTCCAGCTTTCAGCCCATACACTAAATATCCTTCCAAGCTAGATACTGAAGTAAATGAGCTGCAGTCTATAGGTAGAGCTCTATACGTCAGATATGGTGAATGCAATCACAAAATCCATAATAAgtccataatttttttttttactttaaatcttACTTGAGTAATGGTGCCATCATGGTCATACATGTTGTCAATAATATTACATGCTAAATTCATCATACAGGTCTCATtcagctaaaatccactttttaacattttaaaatgtaatttttttttgttctttgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677919.1 True 1567 mRNA 0.40 2 6001986 6003912

Neighbor

gene id symbol gene type direction distance location
LOC111194285 NA coding upstream 35882 5964234 ~ 5966104 (+)
LOC111194287 NA coding upstream 48295 5952966 ~ 5953691 (+)
LOC111194288 NA coding upstream 56293 5944123 ~ 5945693 (+)
atp6v0b atp6v0b,LOC102788333 coding upstream 74124 5917566 ~ 5927862 (+)
LOC103034049 LOC108430294,LOC103359748,LOC104917724,LOC100692768 coding upstream 389856 5599753 ~ 5612130 (+)
LOC111194284 NA coding downstream 7667 6011579 ~ 6012305 (+)
LOC103047152 NA coding downstream 12302 6016214 ~ 6018135 (+)
LOC103031246 NA coding downstream 12321 6016233 ~ 6189636 (+)
LOC103030609 NA coding downstream 187545 6191457 ~ 6224897 (+)
LOC111194230 NA coding downstream 223628 6227540 ~ 6232060 (+)
G139219 NA non-coding upstream 15913 5985416 ~ 5986073 (+)
G139170 NA non-coding upstream 386097 5614294 ~ 5615889 (+)
G139139 NA non-coding upstream 559021 5442556 ~ 5442965 (+)
LOC111194278 NA non-coding upstream 591872 5407208 ~ 5410114 (+)
G139117 NA non-coding upstream 649261 5352155 ~ 5352725 (+)
LOC111194227 NA non-coding downstream 104751 6108663 ~ 6109216 (+)
G139259 NA non-coding downstream 106658 6110570 ~ 6110988 (+)
LOC111194228 NA non-coding downstream 122352 6126264 ~ 6129711 (+)
LOC111194290 NA non-coding downstream 132046 6135958 ~ 6136573 (+)
LOC103047845 NA non-coding downstream 135735 6139647 ~ 6140364 (+)
G139154 NA other upstream 545982 5455480 ~ 5456004 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other upstream 994980 4889873 ~ 5007006 (+)
LOC103026815 LOC108428843 other upstream 1279212 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 1293323 4703346 ~ 4708663 (+)
G138839 NA other upstream 1756122 4237609 ~ 4245864 (+)
LOC107197321 NA other downstream 55505 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 142051 6145963 ~ 6155929 (+)
G139268 NA other downstream 155808 6159720 ~ 6164164 (+)
LOC103028159 NA other downstream 231522 6235434 ~ 6242571 (+)
G139282 NA other downstream 262904 6266816 ~ 6267387 (+)

Expression


Co-expression Network