clstn2 (clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660)


Basic Information

Item Value
gene id clstn2
gene name clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8132286 ~ 8509323 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677952.1
tctctctctctctctctctctgtagcacacacactctctcacacacacacacacacacacacactctctcatacactCAGAGGCTTCTACTATACACACTGCTCCAGctgcggaggaggaggaggagagcggTAACGGACAGCCGGGAGGAGGAGGACGGGCAGCGGGACTCCCTCTATTACAGCGCTGGTTAAACCGGGGGAAAGACCGGTCGTCGTGCTTCAGTCTCTCCGCCTCTCCGAGCCCAAGATGCGGCCGTTCGCCgtggcgctgctgctgctgctggcggTGTTCGGGCAGTGCGGCACCCTGGCTGGGAAAGtgaaCAAGCACAAGCCATGGATCGAGACGTCCTACCACGGAGTCATCACCGAAAACATGGACACCGTCCTGCTGGATCCACCACTTGTAGCCTTGGACAAGGATGCTCCCGTGCCCTACGCAGGGGAAATCTGTGCCTTTAAGATCCACGGGCAGGAGGCCCCGTTCGAAGCAGAGGTGCTGAACAGGACGTCGGGGGAAGGCGTGCTGAGGGCCCGGGGCCCCATCGACTGCGAGCAGCAGAAGGAATACACCTTCATCATCCAAGCCTACGACTGTGGGTCCGGGCCCACTGGAGCCGGCTGGAAAAAGAGCCACAAGGCGGTGGTTCACATCCAGGTGGACGATGTGAACGAGTTCTCGCCGGTGTTCAGGGAGCCGGTGTACCGGGCCACGGTGACAGAGGGGAAGATTTACGACAGCATCCTGCAGGTGGAGGCCTGGGACCAGGACTGTTCGCCTCAGTACAGCCAGATCTGCAACTACGAGATCGTCACGCAGGACACGCCCTTCGCCATCGACCGCAATGGCAACATCCGCAACACAGAGCGACTGAGTTTCGACAAGCAGCAGCACTACAAAATCCTGGTGACGGCCTACGACTGCGGCCAGAAGAGGGCGTCGGAGAGCGTGCCCGTCCACATCGACGTCAAGCCTGTGTGCAAGCCCGGCTGGCAGGGTTGGAATAATCGAGTGGATTATGAGCCTGGAACAGGCAGCAAGCAGCTGTTTCCCAAGATGCACCTGGAGACGTGCGACGGCCCGCTGTCGTCAGTAAGGGCCATGGTGGAACTGCAGACCAGCCACATTGGGAAGGGCTGTGACCGAGAGACATATTCCGAGAAGTCTCTACAGAAGCTCTGTGGTGCCGCTTCGGGCAGCACCGACCTTCTCCCTGCTCCCAGCGCTTCCACCAACTGGACCGCCTCCCTGCTGACAGACAGTGGGCGGGACAGTGACCTCATCTTCCGGTTTGACGGACGGCAGGCCGCCAACATTCCCGAGCGGGTGGTGCCTCAGAATCTCACGGACCAGTTCACCATCGCTACCTGGATGAAGCACGGCCCGAGCCCTGGACTGAGAGCCGAAAAGGAGACTCTGCTGTGTAACTCTGACAAGACCGAGATGAACAGGCACCATTACTCACTGTACGTTCACAACTGCCGGCTGGTCTTCTTGCTGCGGAGGGACTTCACGCAGATGGACACATTCAGGCCGGCTGAGTTCCACTGGAAGCTGGAGCAGATCTGTGATAAAGAGTGGCACTACTACGTGATCAATGTGGAGTTTCCTGCCGTTACTCTGTTCGTCGATGGCGTGACCTACGAACCCTACCTAGTGACAGATGACTGGCCTATTCACCCCTCTCAGATAGACGTGCAGCTGACAGTCGGCGCTTGTTGGCAAGGAGGAGAGGTGACTACGCCGCGCTTCACGCAGTATTTCCGGGGAAGCCTCTCAGGACTGACCATCCGTCCTGGAAAGATCGAGACGCAGAAGGTCATCTCCTGCCTGCAGGCCTGCAAAGAAGGCCTGGACATCAACTCTCTGGAGAGCCTAGGCAAAGGCATCAagtttCACTTCAACCCAGCCCAGTCTGTGCTGGTAATGGAAGGGGACGACTTGGACAGCATTAACACAGCCATGGCCAAAGTCTCCTATATTAACTCAAGACAGTTTCCCACGCCAGGCCTCCGCAAACTCCGGGTGACCACTACTGTCCAATGCTTCGGGGAAGACACGTGCATCTCCATCCCGGATATAAAGGCGGTGGTGATGGTGCTTCCGCCCAGTGAGCCGCGGATCACCATTGCTGGAGTGGAGCGGGCGACGTGGCCCGCCTCCGAGCTCCGAACCCCCGCCGGCATCACCCTGTTCAAAGACATCCgcatcatcagcaccatcaccaaGAGCGACAATGCCTTCAGCTCAggcCACAGACCCGGCATTTTGGAGGTAATGCATAACCTCGATTACTGCGACGTGCTGGTAATTGGGGAGGAGCTGAATCCAGAGCACGAGAGTTTGGAGATTCACCACAGCTCACTACTGGGAAAGCATCTAGATGCCACCAACTCCACATCTGGAATCTCCATCTATGGTGTGGACTCCATGGCACATTACGAACAGGCCATTCGGCAGGTGAGGTACCGCAACCGGCGTCCGGCTGGCCTGTCGGAGAGAAGGTTCCGGCTCAGCTGCTCCGAACTCAACGGCCGCTACACCAGCAATGAATTTAACCTGGAGATCGGAGTACTGCACAGCTCAGAGCCCGTGGAGCACGTCAACCACATGGCCGCCGAGTCCCAGTACATGAGGCCTGTGCATCATCCGCTGATGGTCCACACCATCAACTCAGACCACATTTCAGGCACGCCCCCAGCAGCCACCGTGGTTATAGTGATGTGCATCGCCGCCCTAGTGGTCATTGTCGTCCTGGGCATCTACCGCATCCATACTACCCACCAGGAAGCTACAAAAGAAGATgaggagggagggaaggagccGGAAATGGACTGGGATGACTCAACCCTCACCATCACGGTCAACCCTATGGAGAACATCAGCGGCTCTCAAAGCGCCGGAGAGATcagggaggaagaggaggagcttgaggaggaagaggaagacgACGAGGATGAAGAGGAGCTGGCTGGAGATCAGACCAGCGGCGAATCGGAGGACAGTGAGGAAGACGAGCAGACGGAAGTGAAGGGCAAAGTGAAGGGCAAACTGGAATGGGACCCCTCTACGTTACCCTATTAACAACCCTCCTTaatctaccacacacacacacatacatacacacacacacacatatacaaacatatacagaatatatatacacacag

Function

symbol description
clstn2 Predicted to enable calcium ion binding activity. Predicted to be involved in positive regulation of synapse assembly and positive regulation of synaptic transmission. Predicted to be located in postsynaptic density. Predicted to be active in cell surface; glutamatergic synapse; and postsynaptic membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: calsyntenin-2

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K22660 CLSTN2; calsyntenin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677952.1 True 3173 mRNA 0.57 17 8132286 8509323

Neighbor

gene id symbol gene type direction distance location
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 117661 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 220515 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 402972 7721740 ~ 7729314 (+)
LOC103026260 NA coding upstream 415037 7709316 ~ 7717249 (+)
LOC111194231 NA coding upstream 425744 7698361 ~ 7706542 (+)
LOC111194298 NA coding downstream 62510 8571833 ~ 8573911 (+)
LOC103021839 NA coding downstream 513774 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 609845 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 931369 9440692 ~ 9447133 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 1204240 9713563 ~ 9740992 (+)
G139798 NA non-coding upstream 8943 8122039 ~ 8123343 (+)
G139792 NA non-coding upstream 34543 8097298 ~ 8097743 (+)
G139787 LOC108442840 non-coding upstream 67060 8061730 ~ 8065226 (+)
G139778 copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662 non-coding upstream 89844 8038895 ~ 8042442 (+)
G139782 NA non-coding upstream 96313 8022383 ~ 8035973 (+)
LOC111194297 NA non-coding downstream 3632 8512955 ~ 8514756 (+)
G139902 NA non-coding downstream 34984 8544307 ~ 8544731 (+)
G139903 NA non-coding downstream 35448 8544771 ~ 8545029 (+)
G139952 NA non-coding downstream 284538 8793861 ~ 8794207 (+)
G139954 NA non-coding downstream 307039 8816362 ~ 8816858 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 1085988 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 1390217 6718238 ~ 6742069 (+)
G139282 NA other upstream 1864899 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1889715 6235434 ~ 6242571 (+)
G139268 NA other upstream 1968122 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 652010 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 710951 9220274 ~ 9223981 (+)
G140062 NA other downstream 1030452 9539775 ~ 9540810 (+)
G140103 NA other downstream 1234375 9743698 ~ 9745355 (+)
G140258 NA other downstream 1480595 9989918 ~ 9990296 (+)

Expression


Co-expression Network