LOC111194298


Basic Information

Item Value
gene id LOC111194298
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8571833 ~ 8573911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677953.1
GTTATCATTACTGTATCTCTGGCAGCTGGTGGACATCAAGACCTGTTCTGGGCAACTGGGATTATGGCAACCAAATGGGAGCACGACATCAGTGGCACCGACCCTGTGAGACTTCTCCTCATTGGGCAGAAACGAGCCGGCAGGAGCTCTGTAGGCAACACTCTCCTGGGTGGGCTGTCGTTCGATACGTGGGGTGGCTCAAGCACCACTGTTGCCCATGGATCATTCGATGGCCGCCAGCTGACCGTGGTGGACACGTACGGTTGGGGCACGGAGGAGAACAACGTACCCAAAAAGGAGAAACTGGAGCTTCTCAAaagtctgtctctgtgtgatcCGGGCCCCCAGGCCCTGCTTCTGGTGCTGCCCTTGCTGCAGTTTACGCGGTCAGACCGGACTGCCCTGCAGAAGCGCATGGAGCTGCTGACTGAGGGCGTATGGAGGCACACCATGGTGGTGTTCACGCTGGGTGACCGGCTGCAGGGGCAAATGATCCAGGAGTTCCTACAGCAAGGCGGTGAACACATGGATTGGCTTCTAACCAAGTGTAGGTACAGGTACAGGGTCCTGAACAATAAGACCCCCTTTGACAGGGCGCAGGTATCTGGCCTGTTGGACCGGGTGGAGGACATGCTGATGGAGAATGGATACTGGCACTTCTCCCTGCACATGTACCGCCGGCTGGAGGAGGAGTGGAACCGGCGGGAAAAGGAAATTCTGGAAGCGatggagaaggagaaagagaaagagaaagggaggagGGAGACAAGTCTACCCATATACCAGAAGAGGACGGCCTTGACAATAGGGAACGATGAACTGCTTAAAGTTGTCAACCATGGCTAGGGTCTGTGAGGAACTCTACAACTtttttaaactgcaaaaaaaaaaatatatatatatatatatatatagctctagaaaataaaaataaaaat

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677953.1 True 938 mRNA 0.52 2 8571833 8573911

Neighbor

gene id symbol gene type direction distance location
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 62510 8132286 ~ 8509323 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 557208 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 660062 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 842519 7721740 ~ 7729314 (+)
LOC103026260 NA coding upstream 854584 7709316 ~ 7717249 (+)
LOC103021839 NA coding downstream 449186 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 545257 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 866781 9440692 ~ 9447133 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 1139652 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 1208818 9782729 ~ 9794211 (+)
G139903 NA non-coding upstream 26804 8544771 ~ 8545029 (+)
G139902 NA non-coding upstream 27102 8544307 ~ 8544731 (+)
LOC111194297 NA non-coding upstream 57077 8512955 ~ 8514756 (+)
G139798 NA non-coding upstream 448490 8122039 ~ 8123343 (+)
G139792 NA non-coding upstream 474090 8097298 ~ 8097743 (+)
G139952 NA non-coding downstream 219950 8793861 ~ 8794207 (+)
G139954 NA non-coding downstream 242451 8816362 ~ 8816858 (+)
G139958 NA non-coding downstream 386619 8960530 ~ 8983718 (+)
G140006 NA non-coding downstream 652062 9225973 ~ 9226183 (+)
G140008 NA non-coding downstream 864315 9438226 ~ 9439147 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 1525535 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 1829764 6718238 ~ 6742069 (+)
G139282 NA other upstream 2304446 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 2329262 6235434 ~ 6242571 (+)
G139268 NA other upstream 2407669 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 587422 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 646363 9220274 ~ 9223981 (+)
G140062 NA other downstream 965864 9539775 ~ 9540810 (+)
G140103 NA other downstream 1169787 9743698 ~ 9745355 (+)
G140258 NA other downstream 1416007 9989918 ~ 9990296 (+)

Expression


Co-expression Network