LOC103039571 (tmub1,LOC102788489)


Basic Information

Item Value
gene id LOC103039571
gene name tmub1,LOC102788489
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9440692 ~ 9447133 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677958.1
tgagacttttattttgtcgTGTGAAGTGCGTTTTTCTCAACCGGAACAGATCGGCTAATGTTGATGCGGCCACTCTGCCCGCGAGCTAAAGTGAGAGTAACTGAAAGTGTGGCGGAGTGGAACATGTCGCAGCGTGCAGTGTAAATATGTCAGCAGTGCCTAGTTTGACGTTGCCTTAGGGACACAGCAGCCCAGGATGGTTTTGATAGAGGGTGTGGGTGATGAGGTCACTCTACTCTTTGGAGTGGTGTTTCTGGTGCTGGTCCTGGTTTTGGCCTGGATctccacacacactgctgagcCTTCTGAGCACCTCCTCTCCACGCGCCCAGAATCTGCTGCCCCCTCTTTCGAAGAAGAGAACCAGGAGCCCATTCCCACCAATGACATCAGCTCACCGTCCCATGGCCTTAGGGAGGACAGTAAGGCCGAGACCGAGAGAGCGGGTGAGGAACACAATTCAGAGGAAGGAGGAGGGGATGAAGGCCTGCTGAGAGCGGATGGTCTGAGACGCAGAGAGGCAGCAGGGCCTTCGCTTGCCACAGAGCCACCAGCTAGTGCCTCAAGATCAACACAGCCCAGCCCTTCTGAAGACACGCCCAACGACACAGAGAGGAACATGGTGCTGAGGCTAAAGTTCCTAAACGACACAGAGCGAGTAGCACAGGTCAACCCTGAGGACACCATTGGTTACATTAAGAGGACCTACTTCGCTGGACAGGAACACCAAGTCCGGCTAATCTACCAGGGCCAGCTCCTCCAGGATGACGCCCAGACACTTTCCTCGCTGAACCTGTCCGATAACTGTGTCCTCCACTGTCACATCTCACAGCATGCCACTCGGGCTGTGCCGGCAGGCACCCGTGCTGCGGACCAGGTGCATGTGGCACTGAACGTTGGTAGCCTGATGGTGCCATTGTTCGTGCTCATGCTGTCAGTGCTGTGGTATTTTCAGTTCCAGTATCGCCATTTTTTCACCACACCTGCCACTGCCTCGCTCGTGGGCATCAccattttctttagttttgtagCATTTGGGGTGTACCGTCGTTGATGGTTTAAATcgacataaaaaaaatgcttgcgTGCACACATTCTCACACTAGCACATCAGCGCTGGTGTCTCTTGCTTCTGGGATCTCTGGACTCTCGGGTTGTTTGAAGGCTGCAATTTCACAAAATGATCACTGagatccatgttttttttttcttcaccaaGTGTATGCTTGTTGTCACAGAATGAaatgtgctatatatatatatttttt
>XM_022677959.1
gacttttattttgtcgTGTGAAGTGCGTTTTTCTCAACCGGAACAGATCGGCTAATGTTGATGCGGCCACTCTGCCCGCGAGCTAAAGTGAGAGTAACTGAAAGTGTGGCGGAGTGGAACATGTCGCAGCGTGCAGTGTAAATATGTCAGCAGTAAGTCTTCCCTCCGTTTATCTTTCTTCGTCTTTCTGCAGAATCCGTTTAAAACCCGCGTTTACCGACTGCAGCGGGGATCCGGAGCCGCGCTAAGCTTGCTGTTAGCTCTGAGCTGCGGGGCACTGTTAGCTCACCTGTAAAGCTCCCTGACTGCCTGTGCCTAGTTTGACGTTGCCTTAGGGACACAGCAGCCCAGGATGGTTTTGATAGAGGGTGTGGGTGATGAGGTCACTCTACTCTTTGGAGTGGTGTTTCTGGTGCTGGTCCTGGTTTTGGCCTGGATctccacacacactgctgagcCTTCTGAGCACCTCCTCTCCACGCGCCCAGAATCTGCTGCCCCCTCTTTCGAAGAAGAGAACCAGGAGCCCATTCCCACCAATGACATCAGCTCACCGTCCCATGGCCTTAGGGAGGACAGTAAGGCCGAGACCGAGAGAGCGGGTGAGGAACACAATTCAGAGGAAGGAGGAGGGGATGAAGGCCTGCTGAGAGCGGATGGTCTGAGACGCAGAGAGGCAGCAGGGCCTTCGCTTGCCACAGAGCCACCAGCTAGTGCCTCAAGATCAACACAGCCCAGCCCTTCTGAAGACACGCCCAACGACACAGAGAGGAACATGGTGCTGAGGCTAAAGTTCCTAAACGACACAGAGCGAGTAGCACAGGTCAACCCTGAGGACACCATTGGTTACATTAAGAGGACCTACTTCGCTGGACAGGAACACCAAGTCCGGCTAATCTACCAGGGCCAGCTCCTCCAGGATGACGCCCAGACACTTTCCTCGCTGAACCTGTCCGATAACTGTGTCCTCCACTGTCACATCTCACAGCATGCCACTCGGGCTGTGCCGGCAGGCACCCGTGCTGCGGACCAGGTGCATGTGGCACTGAACGTTGGTAGCCTGATGGTGCCATTGTTCGTGCTCATGCTGTCAGTGCTGTGGTATTTTCAGTTCCAGTATCGCCATTTTTTCACCACACCTGCCACTGCCTCGCTCGTGGGCATCAccattttctttagttttgtagCATTTGGGGTGTACCGTCGTTGATGGTTTAAATcgacataaaaaaaatgcttgcgTGCACACATTCTCACACTAGCACATCAGCGCTGGTGTCTCTTGCTTCTGGGATCTCTGGACTCTCGGGTTGTTTGAAGGCTGCAATTTCACAAAATGATCACTGagatccatgttttttttttcttcaccaaGTGTATGCTTGTTGTCACAGAATGAaatgtgctatatatatatatttttt

Function

symbol description
tmub1 Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human TMUB1 (transmembrane and ubiquitin like domain containing 1).

NR:

description
PREDICTED: transmembrane and ubiquitin-like domain-containing protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677958.1 False 1268 mRNA 0.52 3 9440692 9447133
XM_022677959.1 True 1424 mRNA 0.52 3 9440695 9447133

Neighbor

gene id symbol gene type direction distance location
LOC111194194 NA coding upstream 314872 9119168 ~ 9125820 (+)
LOC103021839 NA coding upstream 415678 9023097 ~ 9025014 (+)
LOC111194298 NA coding upstream 866781 8571833 ~ 8573911 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 931369 8132286 ~ 8509323 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 1426067 7948922 ~ 8014625 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 266430 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 335596 9782729 ~ 9794211 (+)
LOC103038676 NA coding downstream 363449 9810582 ~ 9812214 (+)
fam217a NA coding downstream 382769 9829902 ~ 9847321 (+)
LOC103040953 si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000 coding downstream 414879 9862012 ~ 9876520 (+)
G140012 NA non-coding upstream 479 9439433 ~ 9440213 (+)
G140008 NA non-coding upstream 1545 9438226 ~ 9439147 (+)
G140006 NA non-coding upstream 214509 9225973 ~ 9226183 (+)
G139958 NA non-coding upstream 456974 8960530 ~ 8983718 (+)
G139954 NA non-coding upstream 623834 8816362 ~ 8816858 (+)
LOC111194300 NA non-coding downstream 1 9447134 ~ 9452566 (+)
G140042 NA non-coding downstream 26683 9473816 ~ 9502247 (+)
G140050 NA non-coding downstream 38241 9485374 ~ 9489112 (+)
G140057 LOC108413493,LOC108267407,LOC107599879 non-coding downstream 85696 9532829 ~ 9563624 (+)
G140060 NA non-coding downstream 91245 9538378 ~ 9539308 (+)
LOC103030224 NA other upstream 216711 9220274 ~ 9223981 (+)
LOC103030954 NA other upstream 278169 9161333 ~ 9162523 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2394394 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 2698623 6718238 ~ 6742069 (+)
G139282 NA other upstream 3173305 6266816 ~ 6267387 (+)
G140062 NA other downstream 92642 9539775 ~ 9540810 (+)
G140103 NA other downstream 296565 9743698 ~ 9745355 (+)
G140258 NA other downstream 542785 9989918 ~ 9990296 (+)
G140262 NA other downstream 546453 9993586 ~ 9994066 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 863967 10311100 ~ 10345471 (+)

Expression


Co-expression Network