tmem53 (tmem53,LOC107700979,LOC107730786,LOC107733878)


Basic Information

Item Value
gene id tmem53
gene name tmem53,LOC107700979,LOC107730786,LOC107733878
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9897076 ~ 9904114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677976.1
TATATTCTACAGTGGTGTGTTTTCCTCTATTAGAGAGCCTCTCTGGCCTCGCTCTGCTGCCCTCCATCCATCCTGCGGCGGAGCTGCCGGAGTCCAGGCCAGGCTCGGTTCTGAGCGCGGTGTTGATGGCAGTCAGGCCGGAGCGATAATAAGGAGCCGGCATGGGGGAAGAGGAGGGAATAGACTATAATGTAGTCTTCCCGGAGCCGCGGCTCTCAGAGAAATACTGGCGTGGGTCAAAGGAGCCAGTGGTGATTCTTTTAGGCTGGGCCGGCTGTAGAGACAAACATCTCACAAAGTACAGCTCAATTTATAATTCACAGGGGTGTGTGACCGTACGCTACACAGCACCGCTCAAGACCGTCTTCATCTCGGAATCATTTGGCTACAAGGACCTCAGAAGCATTGCTCACAAACTCCTTGAGATACTGTTTGACTATGAGGTGGAGAACAACCCTATCTTCTTCCATGTGTTTAGCAATGGAGGCTTCATGCTCTACCGCTACATGGTGGAGCTCCTGCAAAGccacaagcagttcagctctcTCTGTGTAGTGGGCACAGTTGTGGACAGTGCACCAGGCAGCCAAAACGTGAGAGGGGCCCTCCGCGCCCTCAAGACCACGCTGGGCCCAAATGTCAACGTGGTGCTGCGGTGCTTCCTCCTGGTGCTGTTCGCTGTGATGGTGGTTCTGCTCAGGGTAGTCCTGTACCCTCTGACCAAATACTTCCATAAGAACCACTACGATGCCATGATGGAGAGTCCGGCGCCCTGGCCTCAAATGTACCTGTACTCCAGGGCGGACCGGGTGATCAGGTACAGAGACGTGGAGCGGATGGTTCGAGTGCTGCAGGAGAAAGGGCTGTCCGCGGAGAGCTTCGACTTCATCACCCCGGCCCATGTCAGCCTGTTCAGAGACTGTCCTGAGGACTACTCCAGCAGGTGCCACACCTTTCTGACCAGCTGCATGACCAGGCGTGAGGAGACACAATCAACAAAGCGCTTCCAAGTGCAACACTGACAGCATTGCCCTTTCACCCAAACCTTAAATTTAATTGCTGTAAAGTCAGGCGTACAAACCACTGTATTTGTATAAATACTACTGatcaaaacatttaataagctGATGACCTTATATAAGTTTATATAAGGGAAAGCTGAATGCTaattgtgttctctgtgtgtgtctggtacTGTgaatttaaaactaatttaatttaagcgTACTATATTTACACTTCTATAGACTGTATTTGACTTATGTGCCTTTCAGAACTAAATAAATAGTCGTTTTGTTTGGTTAA

Function

symbol description
tmem53 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM53 (transmembrane protein 53).

NR:

description
transmembrane protein 53 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677976.1 True 1305 mRNA 0.50 3 9897076 9904114

Neighbor

gene id symbol gene type direction distance location
LOC103036973 LOC108430268 coding upstream 8499 9884209 ~ 9888577 (+)
LOC103040652 NA coding upstream 12950 9880166 ~ 9884126 (+)
LOC103040953 si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000 coding upstream 20556 9862012 ~ 9876520 (+)
fam217a NA coding upstream 49755 9829902 ~ 9847321 (+)
LOC103038676 NA coding upstream 84862 9810582 ~ 9812214 (+)
LOC103041077 slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468 coding downstream 226781 10130895 ~ 10147727 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding downstream 259696 10163810 ~ 10169697 (+)
copa copa,LOC106600386 coding downstream 268830 10172944 ~ 10187687 (+)
LOC111194303 NA coding downstream 286697 10190811 ~ 10212330 (+)
LOC111194211 NA coding downstream 296710 10200824 ~ 10201754 (+)
G140169 NA non-coding upstream 147978 9748696 ~ 9749098 (+)
G140074 nrbp2,LOC108267406,LOC108413492,LOC106597174 non-coding upstream 287915 9597473 ~ 9609161 (+)
G140072 NA non-coding upstream 305273 9590347 ~ 9591803 (+)
G140057 LOC108413493,LOC108267407,LOC107599879 non-coding upstream 333452 9532829 ~ 9563624 (+)
G140245 NA non-coding downstream 5517 9909631 ~ 9910544 (+)
G140249 NA non-coding downstream 21019 9925133 ~ 9926043 (+)
G140251 NA non-coding downstream 22195 9926309 ~ 9926576 (+)
G140255 NA non-coding downstream 36914 9941028 ~ 9942279 (+)
G140274 NA non-coding downstream 194054 10098168 ~ 10156048 (+)
G140103 NA other upstream 151721 9743698 ~ 9745355 (+)
G140062 NA other upstream 356266 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 673095 9220274 ~ 9223981 (+)
LOC103030954 NA other upstream 734553 9161333 ~ 9162523 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2850778 7041560 ~ 7046298 (+)
G140258 NA other downstream 85804 9989918 ~ 9990296 (+)
G140262 NA other downstream 89472 9993586 ~ 9994066 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 406986 10311100 ~ 10345471 (+)
G140402 NA other downstream 491406 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 523152 10427266 ~ 10444540 (+)

Expression


Co-expression Network