LOC103041077 (slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468)


Basic Information

Item Value
gene id LOC103041077
gene name slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10130895 ~ 10147727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677977.1
GTGAAATTGTTATCTGTCTCAAAACTCTAAAGAGAACCTAGACAGTGTGGTTTCTCTGTGCTTAAGCAGCCTGAACCCAGTGCTTCCATCCATTCATGAAGTGagactcctcctcctcttcagtcAGTGGTTCTCAGACTTTAAGTCTAATGCATCTCCAATTCCATTATCCCGGCTAATCTGGCAGCGTGGCGAGGCCGGAGTCTCGGAGCTATCCTTGATTTCTTAATCTCTAGtgagaagcgctttactcagaACTGCTGCGCAACACTTCCTAAGATCAGCCATGGAGGAGAGGCAAAGCAGCAGCAGACGCTCTTCATCTCAGTACCAGTCCTCTCCAGACTCGCCCTGGAGAGCCATGGTAGAGTACCTGAAGAATGTCCTGCACAACAAGGTGTCCCAGAGGATCCGAGACTGGGTGAAGGACTACTGCAGGAAGAACGGCCTGCTGACCCTGTCTGTGCTGGCCGTGATAACTGGCTGCGTGGTGGGCTTCATGCTGAGGAGCCTGAATCTGTCCACTCAGGCCAAGATCTACTTCTCTTTCCCCGGAGAGCTGCTGATGAGGATGCTGAAAATGCTCATTCTTCCTCTTATCACATCCAGTTTGATGTCTGGTCTGTCAGCCATGGACACTAAAGCCAGTGGGCGCCTGGGCCTCCTCACCATCACCTACTACCTGTGGACCACCTTCATTGCGGTTATTGTGGGAATCATCCTGGTGCTGCTCGTCCATCCCGGCACAGGGACAGAGAAGGAGGGACACAAGGCCTCAGGGGGGCCGGTTATGACCTCCGCAGATGCTCTGCTCGACCTCATTAGGAACATGATTCCTTCCAATCTAATAGAAGCAACATTCCAACAGTATAAGACAGATCTTGTGCCTAATGTCAAGAGCATCCCACTCGAATCCCAAGCCAACTATGTGTACATCATGCCAGACCATGACAACCCAAAAATGGGCCACCCGGTGTTTCTGGAGCTGACCCCTGCTCCGGAGATCCACTACAAAGTAGTTCCGGGGAAAAGCAGCCAGATGAACGTCCTCGGAATCGTCATCTTCTCTGCCACCATGGGTTTGCTGCTGGGCAGGATGGGGGAGAGAGGCTCTCCGCTGGTTAACGTGTGCCTCTGCATCAACGAGTGTGTAATGAAGATCATCAACGCTGCCATGTGGTATTTCCCATTCGGGATTGTGTTCCTGGTGGCAGGGAAGATCTTGGACATGCACGACCCCGTGATCCTGGCAGAGAAGTTGGGCATGTACTTTATAACTGTACTGGCTGGCCTGTTTGTGCACGGGGTCATCCTGCTGCCCATGTTCTTTTTCATCTTCACCAAGAAAAACCCCTTCAGCTACATCCGCGGCCTGCTGCAGGCGCTGGTCATCGCACTGGCCACTTCATCCAGTTCTGCCACTCTGCCCATCACTATGAAGTGTCTCCTGGAGAACTGCCATGTGGACCGGAAAATCGCTCGCTTTGTGCTGCCTGTCGGAGCCACCATCAACATGGACGGGACCGCTCTGTACGAGGCAGTGGCTGCTATTTTCATTGCCCAGGTCAACGAGTACGAACTGGACTTTGGACAACTTGTGACCATTAGCATTACAGCTACAGCAGCGAGTATTGGAGCTGCGGGGATCCCACAGGCTGGCCTTGTCACAATGGTGATTGTCCTCACCTCAGTAGGGTTACCCCCAGATGACATCACACTTATCGTTGCCATCGACTGGATCCTGGATCGATTTCGCACCATGATCAACGTGCTGGGTGACGCACTTGCAGCAGGAATTATGGCCCACCTGTGCAGGAAAGACTTCCAGCCAAAAGGTCCACCAAACAACGATCAAAGGcGAGACACTGTGACATCCTACTACGGAAACCAAAGTGTGCAGAGCATCCCTTCGTCTGAGGTACCTCTGATTGCTAACCGAGACTACATCCTGGAGGTGGTGGGGGATCAGGTGATTGAGAGGCCTACCGCGTACTACAACCTCTGCCAAGTCTGAGTCGTTATGAGGAGAGCCCAGAAGGAGTCGCTGCCTTCCACTTCACCGAAACCTTCCCAGCTTTTTCCTTTACCCTTCACTTCTGGTCGTGCCATTCTGCGTCTCCATTGCGCCAGAAACTCCTCCTTCACCTTTTGCGCAGAGAGCAGAAGTTTCAAGAGACCTCACATTTGACTGATCTTGAATATTTGactgattttgtatttcctAAATtagggatttttttatatttaaaacacacacacacacatatatttatatatatatttatgttctaGCATTGCCTTAAAATGCAGAATTTGTCTCAAATCAATTGACACCAGTTAGATTACAGTgacaaaaaaacaccttttaaatatttaaaaccaaatgttttttcCTGTAGCCCACATTTACTGTTAAATCATACAGTgtcaaaaaacataaaccagTTCATTAGAGATTCTACCAGTTTAAACAGTAAAGctgttttattaacatttttcctTTTggccttaaatggtgcagcagccTGGAgcacaaaaacatacagtaacTGCTGCACCTTTTAAGGCCAACTAGAACATTTTGGAAAAGATCTCTCCAGtattttgttccaactgccttgAATCCCGGGCTGGATTTTTCATTCTGGAAAAATGACTACCATACCTGGCAGTTAGAACTATGCTGACTGGTATAAGCTTCTTTCACTTTCTACTTTTGGGCTAAACAGGGTTAAACTGTTGATGTGATATTTAACTGAACTTTATCAGACGTATTAGTATCTGCTCATGTGGTCAGCTGCAGTATGTGAAAGCCAGGCCAGCCGCTGCCTTGTTGTACTGCGAGTGTTGAAGAGTGAATGTTTCTGTAGTCGAGTAGCGACGAGGACTGCGTGCGCAGCTCTCAGAACAGTACTCAACTgtaactgtgtttatttattttttataataaaactgaAGGAGTATTTCCACACACCTTAA

Function

symbol description
slc1a8b Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cerebellum; optic tectum; and telencephalon.

NR:

description
PREDICTED: excitatory amino acid transporter 5-like isoform X1

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0017153 sodium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677977.1 True 2979 mRNA 0.48 11 10130895 10147727

Neighbor

gene id symbol gene type direction distance location
tmem53 tmem53,LOC107700979,LOC107730786,LOC107733878 coding upstream 226781 9897076 ~ 9904114 (+)
LOC103036973 LOC108430268 coding upstream 242318 9884209 ~ 9888577 (+)
LOC103040652 NA coding upstream 246769 9880166 ~ 9884126 (+)
LOC103040953 si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000 coding upstream 254375 9862012 ~ 9876520 (+)
fam217a NA coding upstream 283574 9829902 ~ 9847321 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding downstream 16083 10163810 ~ 10169697 (+)
copa copa,LOC106600386 coding downstream 25217 10172944 ~ 10187687 (+)
LOC111194303 NA coding downstream 43084 10190811 ~ 10212330 (+)
LOC111194211 NA coding downstream 53097 10200824 ~ 10201754 (+)
samd7 samd7 coding downstream 71846 10219573 ~ 10234260 (+)
LOC103034722 NA non-coding upstream 851 10125320 ~ 10130044 (+)
G140255 NA non-coding upstream 188616 9941028 ~ 9942279 (+)
G140251 NA non-coding upstream 204319 9926309 ~ 9926576 (+)
G140249 NA non-coding upstream 204852 9925133 ~ 9926043 (+)
G140245 NA non-coding upstream 220351 9909631 ~ 9910544 (+)
G140297 NA non-coding downstream 50325 10198052 ~ 10201839 (+)
G140305 NA non-coding downstream 129150 10276877 ~ 10278511 (+)
G140331 NA non-coding downstream 159693 10307420 ~ 10307715 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding downstream 185101 10332828 ~ 10335069 (+)
G140391 NA non-coding downstream 213264 10360991 ~ 10361377 (+)
G140262 NA other upstream 136829 9993586 ~ 9994066 (+)
G140258 NA other upstream 140599 9989918 ~ 9990296 (+)
G140103 NA other upstream 385540 9743698 ~ 9745355 (+)
G140062 NA other upstream 590085 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 906914 9220274 ~ 9223981 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 163373 10311100 ~ 10345471 (+)
G140402 NA other downstream 247793 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 279539 10427266 ~ 10444540 (+)
G140520 NA other downstream 650818 10798545 ~ 10798891 (+)
G140659 NA other downstream 1232371 11380098 ~ 11383505 (+)

Expression


Co-expression Network