LOC111194303


Basic Information

Item Value
gene id LOC111194303
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10190811 ~ 10212330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677980.1
GACACTGAAGGGGTCGCCTGGGGTGCGCCCTAAAATCACTATAAAAGGAATGCTACACACACTCagaacccaacacacactcagaacCCGACACACACTCAGAGAGCAAACGGGTGTAATGATGAAGGCTGTGCAGGTGTTGTCTCTGACACTGCTGTCCGTGCTAGCGGTCAGTGCCATGACCTTTCATTCAGGCCGCTGCCCCACTCCTCCTGTCCAGCAGAGCTTCGACCCCACCCGTTATATGGGAAGGTGGTATGAGATCCAGAAAATACCCAACGCCTTCCAGCTTGGTGAATGTGCTCAGGCTACGTACACCCTGAAGGATGGAGTCGTACTAGTGCTGAACGAGGAGCTCCTtgCTGATGGAACAGTCAGCAGTATTGAAGGAACAGCTAAAGCCAAAGATCCATCTGAACCAGCCAAGCTGGAGGTCAGCTTCTTTGAAGGAGTTCCTCCTGGTAATTACTGGGTTTTATCCACCGACTACGATAATTACACGCTGGTTTACGGCTGCACCAACTACCTGAACCTCTTTCATGTGGAGTTTGCCTGGATCTTGAGTCGTGGCCGATCCCTCCCGAAGGAAACTCTAGTTGAGCTGCAGGACATTCTGATCTCCAACGGCATCAAGATCGACACACTGACCTCCACTGACCAGGAGCTGAAGCGCTGCAGTGCCATGCCACAGTGAAGCCGGATGAAGATCTgctgtgtttaattatttatttatttgcttattaagTCTATTAAGGGCTAAATTATTCCATGTCTGATATAAAACTAATGCATGAGTTCTGGATTTTAGGGGTTAATTAATGTCCATCTTcttctgtatttatattttatgtggaaAGGAGGAAATGTGTTTAGTAGAAACATTCTGGTGTTCCTCTTTCACTTCAATAAACATTAAAGTACAACACAACCCAGGA
>XM_022677981.1
CTACACACACTCAGAACCCGTCCCACACTCAGAGAGCAAACGGGTGTAATGATGAAGGCTGTGCAGGTGTTGTCTCTGACACTGCTGTCCGTGCTAGCGGTCAGTGCCATGACCTTTCATTCAGGCCGCTGCCCCACTCCTCCTGTCCAGCAGAGCTTCGACCCCACCCGTTATATGGGAAGGTGGTATGAGATCCAGAAAATACCCAACGCCTTCCAGCTTGGTGAATGTGCTCAGGCTACGTACACCCTGAAGGATGGAGTCGTACTAGTGCTGAACGAGGAGCTCCTtgCTGATGGAACAGTCAGCAGTATTGAAGGAACAGCTAAAGCCAAAGATCCATCTGAACCAGCCAAGCTGGAGGTCAGCTTCTTTGAAGGAGTTCCTCCTGGTAATTACTGGGTTTTATCCACCGACTACGATAATTACACGCTGGTTTACGGCTGCACCAACTACCTGAACCTCTTTCATGTGGAGTTTGCCTGGATCTTGAGTCGTGGCCGATCCCTCCCGAAGGAAACTCTAGTTGAGCTGCAGGACATTCTGATCTCCAACGGCATCAAGATCGACACACTGACCTCCACTGACCAGGAGCTGAAGCGCTGCAGTGCCATGCCACAGTGAAGCCGGATGAAGATCTgctgtgtttaattatttatttatttgcttattaagTCTATTAAGGGCTAAATTATTCCATGTCTGATATAAAACTAATGCATGAGTTCTGGATTTTAGGGGTTAATTAATGTCCATCTTcttctgtatttatattttatgtggaaAGGAGGAAATGTGTTTAGTAGAAACATTCTGGTGTTCCTCTTTCACTTCAATAAACATTAAAGTACAACACAACCCAGGA
>XM_022677982.1
GAGAGGATCCAGTATGGTGTAATGATGAAGGCTGTGCAGGTGTTGTCTCTGACACTGCTGTCCGTGCTAGCGGTCAGTGCCATGACCTTTCATTCAGGCCGCTGCCCCACTCCTCCTGTCCAGCAGAGCTTCGACCCCACCCGTTATATGGGAAGGTGGTATGAGATCCAGAAAATACCCAACGCCTTCCAGCTTGGTGAATGTGCTCAGGCTACGTACACCCTGAAGGATGGAGTCGTACTAGTGCTGAACGAGGAGCTCCTtgCTGATGGAACAGTCAGCAGTATTGAAGGAACAGCTAAAGCCAAAGATCCATCTGAACCAGCCAAGCTGGAGGTCAGCTTCTTTGAAGGAGTTCCTCCTGGTAATTACTGGGTTTTATCCACCGACTACGATAATTACACGCTGGTTTACGGCTGCACCAACTACCTGAACCTCTTTCATGTGGAGTTTGCCTGGATCTTGAGTCGTGGCCGATCCCTCCCGAAGGAAACTCTAGTTGAGCTGCAGGACATTCTGATCTCCAACGGCATCAAGATCGACACACTGACCTCCACTGACCAGGAGCTGAAGCGCTGCAGTGCCATGCCACAGTGAAGCCGGATGAAGATCTgctgtgtttaattatttatttatttgcttattaagTCTATTAAGGGCTAAATTATTCCATGTCTGATATAAAACTAATGCATGAGTTCTGGATTTTAGGGGTTAATTAATGTCCATCTTcttctgtatttatattttatgtggaaAGGAGGAAATGTGTTTAGTAGAAACATTCTGGTGTTCCTCTTTCACTTCAATAAACATTAAAGTACAACACAACCCAGGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005576 extracellular region cellular_component
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K03098 APOD; apolipoprotein D and lipocalin family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677980.1 True 935 mRNA 0.47 5 10198066 10212330
XM_022677981.1 False 865 mRNA 0.47 5 10210482 10212330
XM_022677982.1 False 838 mRNA 0.46 5 10190811 10212330

Neighbor

gene id symbol gene type direction distance location
copa copa,LOC106600386 coding upstream 3124 10172944 ~ 10187687 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding upstream 21114 10163810 ~ 10169697 (+)
LOC103041077 slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468 coding upstream 43084 10130895 ~ 10147727 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107733878 coding upstream 286697 9897076 ~ 9904114 (+)
LOC103036973 LOC108430268 coding upstream 302234 9884209 ~ 9888577 (+)
samd7 samd7 coding downstream 7243 10219573 ~ 10234260 (+)
sec62 sec62,LOC107738178,LOC102781860 coding downstream 23392 10235722 ~ 10246002 (+)
gpr160 NA coding downstream 59684 10272014 ~ 10276220 (+)
phc3 NA coding downstream 138566 10350896 ~ 10369990 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 273392 10485722 ~ 10524437 (+)
G140274 NA non-coding upstream 34763 10098168 ~ 10156048 (+)
LOC103034722 NA non-coding upstream 60767 10125320 ~ 10130044 (+)
G140255 NA non-coding upstream 248532 9941028 ~ 9942279 (+)
G140251 NA non-coding upstream 264235 9926309 ~ 9926576 (+)
G140249 NA non-coding upstream 264768 9925133 ~ 9926043 (+)
G140305 NA non-coding downstream 64547 10276877 ~ 10278511 (+)
G140331 NA non-coding downstream 95090 10307420 ~ 10307715 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding downstream 120498 10332828 ~ 10335069 (+)
G140391 NA non-coding downstream 148661 10360991 ~ 10361377 (+)
G140392 NA non-coding downstream 159122 10371452 ~ 10374169 (+)
G140262 NA other upstream 196745 9993586 ~ 9994066 (+)
G140258 NA other upstream 200515 9989918 ~ 9990296 (+)
G140103 NA other upstream 445456 9743698 ~ 9745355 (+)
G140062 NA other upstream 650001 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 966830 9220274 ~ 9223981 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 98770 10311100 ~ 10345471 (+)
G140402 NA other downstream 183190 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 214936 10427266 ~ 10444540 (+)
G140520 NA other downstream 586215 10798545 ~ 10798891 (+)
G140659 NA other downstream 1167768 11380098 ~ 11383505 (+)

Expression


Co-expression Network