rnf182 (rnf182)


Basic Information

Item Value
gene id rnf182
gene name rnf182
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11568053 ~ 11573213 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678015.1
taatgccttttatgacAAATTACTGGTTCAaccacatgtgacactgtggatccagaaatgttaaatgtaggCACAACTTCAAAAATGGAATTTTCCATCCATCTAGCAACTAGACAACTAGAAAACACCCTCCAACTTATATAGGTGTGGTCATAAGCAAGCCATCCCATGAGGTaatacttcatgatcaatttacacactGTATCTTTTATTTAGAGCGTGTATACAATTAGTATTGTAATGCGTGGCCCTAAAATCCCTGCTTATGTCTTTAGGGATGAAACACAGGTACAGCAAACCAATTTCTGTAGGTTTTGTTTCAATGGTGTCAGGTTTTATGGTGCATTTGAAATCATTTCCTGCCTGCAACTAGGACTGTGAACTATCACACATGGTAGATTATGAATAATAGCCTCACAAATCAGAGCAGAAGACAGAAGCAGAGAGCATAGCCCATTTTCTCCTGTGCAGCCAGTGAATGCTGATGAACTGGCTGAGTATTAAGAgcagttttcagtgaagtttacAGATCCaccttttttattcaaaataaaaataaaattacctacaactgtgttttttaatgcttaatctaatcttttaaaataaaaaaaaattattacaacACATAAGATACAGTAGAAAGACCCCTTATCAGTGTTAACAGTGCACCACAGAAAAGAGGAATGGAGGCACTAATTGGACTGAATTTGACTGGCAACAAAAGGTCTGGCTAGAAAATTCCAGCCCTGGTTTTACAGGGCCTGCTTTGTTGCTGTCGCGTTTGTTCTCTATTGCTGTGTTAACAGTTATCTTTTCTCTGGCAGCCTCTCCCCACCCTTCCACAGAGTGCAGGAAAGAGTGTCCAGTGCGAATGGGTCCAGCGCCGCTCAGACGCTGCTCCAGTTTGCCCAAGCCTGCATGGCACTCTCTCTGGAACCTGTCTGTGGTGTAGCAAGAGTCTCTCAACCATGTCTGTTACTACAACAAGCCCTTGCCACAACACTGAGAGGAGAGAGGCATGATGGGTCAGCTTCCAGAAGAGGTTTTGGAAGGCTTTGGAGCCGAGGAACTGGAGTGCAAGATCTGCTACTGCCCTTACACTCTGTCTGGACGACGGCCTAAAGTGCTTGAGTGCTGCCATCGCTTGTGTGCCAAATGTTTGACCAAGATCCTTGATCTAGGAGACTCACCCCCGAATGGGGTGGTCTGTCCTTTCTGTCGCTATGTTACTGGACTCCCTGGAGAGGCTGTGGCAAGTCTGCCGGACGATTGCAACCTTGTGACGGCATTAACCATCCGTACCCGCTTTTATTCCAGCCTTCGGGAGAACCACCAGGGCGAGATCTTGTTGAGCCCCAGATGCTTGAACACTCTAGTGGGCCACTCGGCATCAGCCTCACCTTCGTCCATACACTCCAACTATGTGGTCATCACCATCATGGAGCCTCCACAGGAGCCGGTGGTGGGTACCAACGGGGCTGGAAGGAATCATCACTCATCCAGTCTGGACTCCATGGCCTCGGTTACCCGGCGCTGGACAGTGTGGAACTGCGCAGCCCTGCTTTGTCAGACCTCAGCCCGAGCCCTGCTGTGGCTCCTTGGGCTTCTCTACTTCAGCTCCCTACCACTAGGCGTTTACCTGCTCATCATGCAGAAGACCACGCCGGGCGTGCTGCTGGTCAGCCTGGTGCCCGTCAGTCTGCTCGTGATCATGGGGTACGGGCTTTGCCAGTGCATGTGCCATGAGTTCTGGAACTGTGTCCTGCCATGACTACCAATGGGAGGTGGACTATTTGCCCAAACTTGTTATCTAAACTGGTGACCTCACCACAGGAATTCTGGATGCATCAGTGGTGCGACAGGTTTGTGGAAATCTATGGACTCAATTAtggtattttctgttttatttaaggAAAGAGAAGTGTGTTAATTAATGACTGAGAATAAAAGTTAagtttgtcatgtttttttagCATTAAATTCCAAATCGCAATTGTGATTATGCCTTGGATGGGATGAACTAATGGACCCTTGATGTAACATGGCTAATGGTGTATCGGGTTAATGCCTTGATTCATCAAAAACCTGAGAATCTGAGAACTGGTCAGAATGCTCATGACACATGATCAGCATTGGAAAGaccaatatcacaataactataaagcattaaatataatttatcctAAGCTGCTAAAGAGCATAATTACAACAGAGCTCCCAACAATTAAGGTGTTCTCTTGCTAATATTTTGTATAGGAAAAGTTTCCCAGAAAGGGATTAAGCTGATCTTGGACTTAAACATTGTCAGGAAactttttgaaaatatttttacttagttttgtaatccaccaaatatattCAATTACAAGAGTGtctgtgtattgtttttttcctgtgtttcttttatttcccAGACAATTAATTAATgacaatgtaaataatatagATATGTGCACTGGAAAAATCTGTGTGAGTCATTGTTTCAATGAGGGAGAGATGTTGTATGTTGGCCACATATGAGTATGCTAATAAAGTATTTAGCCTACCTTAGCAGGCCTTTAACCTGAAACCTATTGGCATCAATTTGTAAAATGAAtgattctttaaataaaataaaaataggtatttattgtatatttatatgggACTTGACTATGAGTTGGTATACTCTTGGTTCATTTCTGGTTTGCAAACTGTTTGGAAAATGTTCCCATCTGttcaaataattttacattCAAATTCCTAGTTTCTATAAACattcagttattttatttctttacttatttttaagttaaagcagcagtacttaagatttatttaaaacagttgtTCTCCTTGGTTGGGAGTACAACTCATTGCAAgccaaatatattatatatagattttttctgGTTACTCGAGCAAACATGGTGATGGTATTGTTGCTGATACAAACTCAGTCTGTTCATTCTCACACTGGTTAATCAATGAAACACAGAATTAGAGCTGAAAAGAGCTGGCAAGAAAAACGAGACcagattcatccgctctaaCAGGAAACCGCACCACAACAGACTTCTaaaaagtactcttccacatgcttgATTCAGTTAcacattctttttttacatttaatttcaaatttttatcccattttctctccaatttacacagccaattacccaacccactcattaggactccccataTCACTAGTGGCAGGCGTATGTATCTTTATAGAGAACACTTAAGTACGAAACAAGGACAGTAGAAAAACATGAGAACATGCATTGTGCTGAGAAATTTGGCTGCATACAATTCACGCTAAGTTGTACTTTATGTAATATATTGCGTCTCATGAGAATATAGCTTTTATGTCAAAAAGttaagttgctctggataaggCTGTCTGCTATAtaccttaaataaaaatgtaaaataggaTTTTTATCCTCTGTATTTTTAGAAGTTCAGAGGTTTCTCTTAAATCACTGTAATGGACAATAATTTTGAGACCAGAGGATGTCGAGAGGACATCCTGGGCTTTCTTGTGAGGCTTTCTTTGATAGTGTCAAAACAGTGcacaattactttttaaaatttcagTTTTTACAGATATTGTTTCTGCTGCTAataatcaaaatgttttttgaaatatttttcttaaCTTCATACTGTAATTTTAACTATTTCAAACCACATTTTATGAATCACTTTTATTTAGTGTCCTCTGTGGTAAACAACAGGGCTTACTGAATCGCATTTTTATCTGGTTCCCATACCTGTAAAATCTGAGGGCTGAGTGAGGCTAAAAGGATTTCACTCAGAATTGTGAAAGGGAACACAAATGCAGAGCTCTCAGATAAATTAGAGAATGGCAGGATAGTAGAGCAGGAAGTGAAAGGTCAGAGAATGATCTAGAGTCTGAAAAGGACCAATCAGCTTTTTAGAGGGCTGAGCAGAAACTTTCAGTTATTTTGGTTTTGGAAAGATTTTGGAGCAGACAAACTAGTGGGATGTGCAAATCTCTGGAAGAAGCTTTTCATAGGACAAAAGAGACAAGTGATTAGTATGTTTGTCTTCCAGCGCTGGAGTCCTgtgttcaagtccctatctgggtgaagGTTTCATGTTCTCTTTGTGTCAGTGTGGGTCTCCTCAGGTTCCTCATGTTAATTAGTTGCACTTATAATTGCctagaaaaaaatggataacCTAAATTTGTCTGTTATTTATGTACGactgtatgcccagatatggactGGCACTCTGTGCTGGGTAAACTCGATGTAGCCGATGTAGCCCTCCAAGTGGATTTCCGGTTGTGAGTACCAATTGGCTGGCACTTCTCACTGGTGAGTGTTGAACAGCGTAAGTGATTGTGTGTGGAATGTAATTATAAGTGTCTTTGAGTGCCTAGAAAGTAAATATCTCATGATGATATCGTcaccttcctaaaataattcaccttttttttgtgcCTAAATCATCTCCTCATAGTGCTGCATGGTACCTGTGGTAAAGTCATCTACATACTCAGTAGATCAGATCCTTTGATTCTACCCCTTTAGGATAATGGCCTAGTGTGTCAATAGTGTGACTTtagataatttatttatgttttattatttttttttaactaaatctacaataactacattattcTGGGTACGTGATTCAGTCAGTAATTGATGAGATTTTTACTTCAATATCAAATTTtcttcatattaataaagccCACAAGCTGTAAAGATGGCATAGTagtttagtattattattgagttagatttttttttagtctgtatttttgtgtctgttaaaatgttatctgttttctgtctttttaatcaatattttaaaaactgactGTATAATAAACTAATCTCTTAAACCACTGCACTCATTATTAAATAGCCATTACAACTgtcatgtgttttttatgtttcctgaaaaaataagttatGGTAGGAGGGTGTTGATATGTCTCCTTTGGCTGCAAAATGTTCTTCGCACGGcgatttgtatttcattatttaaaaatgctgtaaatgctcCACAACGACAGAAACACTCAAAACTTGAATGTCAGCGTGTGTCTGCATTTAGAAAAATACTGCCAGTAAATGAATAGTTTAAAAACTCTGATTATcgaatattaatataattttttgaaCTTCAT

Function

symbol description
rnf182 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human RNF182 (ring finger protein 182).

NR:

description
E3 ubiquitin-protein ligase RNF182

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11983 RNF182; E3 ubiquitin-protein ligase RNF182

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678015.1 True 5161 mRNA 0.39 1 11568053 11573213

Neighbor

gene id symbol gene type direction distance location
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 132 11532828 ~ 11567921 (-)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108437243,LOC108267170,LOC107713986 coding downstream 48016 11514923 ~ 11520037 (-)
stard3nl stard3nl coding downstream 54587 11498055 ~ 11513466 (-)
LOC111194197 NA coding downstream 179827 11386825 ~ 11388226 (-)
LOC103037030 NA coding downstream 370280 11184130 ~ 11197773 (-)
trnad-guc_16 NA coding upstream 182315 11755528 ~ 11755599 (-)
LOC103027519 NA coding upstream 246646 11819859 ~ 11832264 (-)
LOC103031742 NA coding upstream 372213 11945426 ~ 11968401 (-)
LOC103032062 NA coding upstream 401535 11974748 ~ 12050443 (-)
LOC103032996 NA coding upstream 483622 12056835 ~ 12121276 (-)
G140748 NA non-coding downstream 37243 11474957 ~ 11530810 (-)
G140754 NA non-coding downstream 44091 11521460 ~ 11523962 (-)
G140708 NA non-coding downstream 79752 11328689 ~ 11488301 (-)
G140735 NA non-coding downstream 142926 11424165 ~ 11425127 (-)
G140725 NA non-coding downstream 164171 11378307 ~ 11403882 (-)
G140798 NA non-coding upstream 115339 11688552 ~ 11692103 (-)
G140822 NA non-coding upstream 233619 11806832 ~ 11807230 (-)
G140823 NA non-coding upstream 243631 11816844 ~ 11818965 (-)
G140825 NA non-coding upstream 262296 11835509 ~ 11836832 (-)
G140815 NA non-coding upstream 263964 11837177 ~ 11843218 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 1053246 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 1222555 10311097 ~ 10345498 (-)
G140342 NA other downstream 1464596 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 1854016 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 2856954 8671024 ~ 8711099 (-)
G140772 fam134b other upstream 33022 11606235 ~ 11610529 (-)
G140975 NA other upstream 600482 12173695 ~ 12174994 (-)
G141020 NA other upstream 775346 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 899591 12472804 ~ 12572147 (-)
G141220 NA other upstream 1742678 13315891 ~ 13316365 (-)

Expression


Co-expression Network