LOC103030795


Basic Information

Item Value
gene id LOC103030795
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11644036 ~ 11655408 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678016.1
CCCCTACCATATGTCATGCCCTTTCGCTTTTTAATGATCAAGCACCTCCTTAAAAATGCTGCTCGGCACTCTCGACCTTCACCGGCTCTTCAGGGGAGAGGAGAGTTTGGGTGCAGATTCCGCTGCCCCCCTCCAGCCCACCACCAGTTTAGAGCCTTTCTGCTGAGTCAGGAGCTCCTGAAAGCAGAACAATGGCTAAACTCAAGCTGTCCTTCTTGTTCACTGGAATTGTGCTCGCTGCCGTCTTCATGCCAGATTTTCTGGGGGGCTGGTCCAGTGGGGCACCAGGAGAAAGAGGAAGGTTCAGTTGCTGAAGCCGCTGCTGAGGAGAAGCCAGCAAGCTCATCTGCTCTGAAGAAGTTGGGACGTCACAGGAGGAACATTGCCTATTACAAAAACGTACCTGATTTCTGGGTCTGGTACAAGTACTATGTGGACACCCACAACCAGGAGGGAATTGAGAATATGGATCAACTCTACCGGACTTACCTCCAGAACAAGCACAGAGTGGAGGAGGGTCGTTCCTACAACCATTACCTCAGCCACCTTAGTGAGATCTACAAGGCTTGTGCCAACTCTGATGACCCAGACTGCATCGCTGAATCAACCAGCAAGCCTACGGCTAAAGTCGTTATGCCTGCTCACTTCAGGCAAGCGAAGGTGCAGGTGTGCAACCCGTACCTTGATCCCTATTGCCTCTATGGTTATTACGGACAGGCGCCGTCCGAGGGGCCTTCTCCTGCTCCCATTAAAACAGCAGCTCCCATCCTTAGTCCCTTTCTCCCTTTGCCCTTGAAGGCCCCATTAGGCTACTACTATGCTCCTGTGATGGAGTCTTTCTTGTCAGCCGAGCAGAAGGCTGAACTTCTGCGGATTTGCGACCCTTCCGACACGGAGTGCCTTCAATACCACTTGCGTGCGGCCTACGGCTACAAGCCTGCTCTGGGCCCAGCACCTTCCTATGCTCACTTAAGCTGTGACCCCAGAGTAGACCCCTATTGTCGGCCCACTCTGGTAGCCAAAGGTCCCTCAGGTCTGTACCATTTGTATCCCCACTGTGATCCTGCAGTTGACCCTCTTTGTGTCACCAACGTAGCTCCAGCTGCCCAGTCAGCGGGCACTGAAGAGGCTTCCAGTCATTACTGCAACCCACTCTTCGACAAAGACTGCAACCCTCTCAGTGCTGCCAAGCTGGCTGCGCTTACCAAGCCTGTGCTGGAGTACGCCCCCAAAGATCAGCCAGCTCCTCTCAACTTGGCCTGCGACCCACGCTACGACCCATACTGCTTGATTGGGGGAACAGCTGCCCTGTTGAAATCCCCACCACTTCTTCCCCAGTTCCAGTCCCGCTCTCAACTTGGTGTCAGAGGCAAGACCAAGGAAGGCTACGACTGCTACGTCTACTACGATAAAGACTGCACACCTCTGGAAGCACACGAATTGAAGGCAAGTCCTGTGAGCACAAAGCCAGACTGCCATCCGTACGATCCCAACTGTGGCAAGATTGCACCCCAGGGCTTTGCTGCTGGAGTGGCAGCAGCCAACACAGTCCGTGACGGAATAATCCAACCCCATCCAGACTGCGATCCTGAGATTGACTTCAACTGTCGCCTGCGTCGTGCTGGACCCGCAGCCAATGGGATGCAAGGTGATGAACCCCAAGATGAGCCGGCCAAGCAAGAAAGCGACCAGGAAGAGCCCAACACCAGCGATACAGCTTCAGAGAATGTCCTGAGGGCATATTTGAGTCAGTACAAGAAATAAGAAGCTATTCTCACAACTTTTGGGAGAAGCTTAGGAAATTCAGCCCAAATGGGATACTTTTTCACAAACTTtcgcaaaaaaaacaacaacccacaGTTCTCAGGGCAGCAGAGACCTGGTGACCAGGCCAGCACTTACAGTCCAGTGAAGTGTAAGAGACCAGTGCAAGCAGATGAATCAAAAGATGTACCATTTCAAAAGAGACAGTTATCCATTAAACAAACATTACTAGCATGTAATGTACTGTCTGCCCTGTGTTCGGATCCTCAACCCCATCGTTACACCATATGTTAATATTAACCTTGAAATTCTTTTgtcaaagtaaaaacaaaaaacggatgtatttatgtatgttacAGATTAGATGTAGTTGAGTATGGGTTagtatgcatttattttataggCATAATAGTACCTAGCTGTTATGTATGTTATTAATTTTTATGGCGTGTTATGTGGTTtcccaaatcatatttttctggTTTTCTGTGCAGTGTTCATCTGATGTATtgctaaaataaacaacaaacacaactCTG

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0033333 fin development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678016.1 True 2303 mRNA 0.50 5 11644036 11655408

Neighbor

gene id symbol gene type direction distance location
retreg1 fam134b coding upstream 36650 11576112 ~ 11607386 (+)
nol7 NA coding upstream 113129 11521440 ~ 11530907 (+)
LOC103022687 NA coding upstream 150330 11481749 ~ 11493706 (+)
LOC111194307 NA coding upstream 191430 11451935 ~ 11452606 (+)
LOC111194236 NA coding upstream 193093 11450374 ~ 11450943 (+)
LOC103026935 ralyl coding downstream 17200 11672608 ~ 11754085 (+)
lrrcc1 lrrcc1 coding downstream 100253 11755661 ~ 11781589 (+)
e2f5 LOC108437220,LOC108268108 coding downstream 128669 11784077 ~ 11795844 (+)
LOC103028056 NA coding downstream 211042 11866450 ~ 11927748 (+)
LOC103028579 NA coding downstream 476779 12132187 ~ 12172466 (+)
G140695 NA non-coding upstream 8436 11629416 ~ 11635600 (+)
G140688 NA non-coding upstream 73834 11570001 ~ 11570202 (+)
G140666 NA non-coding upstream 108761 11532819 ~ 11535275 (+)
G140676 epdr1,LOC108437243,LOC107664036,LOC107558964,LOC107713986,LOC108267170 non-coding upstream 124024 11501056 ~ 11520012 (+)
G140637 NA non-coding upstream 130615 11506664 ~ 11513421 (+)
G140791 NA non-coding downstream 161158 11816566 ~ 11819156 (+)
G140795 NA non-coding downstream 180078 11835486 ~ 11836832 (+)
G140796 NA non-coding downstream 181765 11837173 ~ 11841898 (+)
G140830 NA non-coding downstream 219862 11875270 ~ 11890671 (+)
G140829 NA non-coding downstream 274233 11929641 ~ 11930833 (+)
LOC111194237 NA other upstream 165296 11455485 ~ 11478740 (+)
G140659 NA other upstream 260531 11380098 ~ 11383505 (+)
G140520 NA other upstream 845145 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 1199496 10427266 ~ 10444540 (+)
G140402 NA other upstream 1244060 10395520 ~ 10399976 (+)
G140931 NA other downstream 582580 12237988 ~ 12240625 (+)
G140930 NA other downstream 723588 12378996 ~ 12381554 (+)
G141086 NA other downstream 1086065 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 1187390 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 2200195 13855603 ~ 13858605 (+)

Expression


Co-expression Network