LOC103032996


Basic Information

Item Value
gene id LOC103032996
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12056835 ~ 12121276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678032.1
TGACCAACAGGCAAAATTTTAAGTCTGGATTTGACTCTGCATTGTCCATTTCATGGACTGTCAAGATGTTTAAAGAAACTGCTGTTATTCTGcttttacatacatatttaatcTGCTCGGCTCAGTCAGATGGGAATTTGTTGATCTACAATGCTCATAAGAACAGATGCCTGGGGAACAACCTGCAAGAACTAGAGGTGTGTGACCTCAGGAACCCGAGACAACAGTTCCGCTGGACTTCAGCGAACCGCATCTTCAATGTTGCTGAGAAGAAATGCCTCGGCACAGGGAACATGACTGAGGGTAGTAAACTACAGTGGTACACCTGTGATGCTGACAGTGACCTTCAGAAGTGGGAGTGTGAGAACAACTCACTGTTTGGATTGAAGAACGAGACTCTGTACTTATCTATTCAGGATAATTCTAATTCACCAATAGTGTCTAGTGAACTAGGAGAGAAGAGCAAGTGGACACTTCATGGAACAACGGACAGCGTTTGCTCTCGTCCATATGAAGAAATCTACACTCTTAAAGGAAGAGCTTATGGACTCCCATGCCATTTTCcgtttttttataataacacCTGGTACACAGACTGTACAACTGCTGGCCGCTCCTCCAACCTATCATGGTGTTCAATTGAAAGAGATTATGAACCAAACCAGCTCTGGGGTTACTGCCCAACTCAACAAATAGTTCAACAGTTCTGGAGGAAGAGCCCAGTGACAGACGTTTATTACCAGGTGAATGAAGATTCTGTGTTGACCTGGTATCAGGCCAGGAAGAGCTGTCAGCAGCAGGGGGGAGACCTGCTGAGCATCACTGAGCCCCATGAGCAGACCTTCATATCAGGGTGGATTCCGATGGTAGGCCCAGTCTTGTGGACAGGACTGAACAGTTTAGATGCATCCAGTGGATGGCGATGGGCCAACGGACAACCTTTACGCTATCTGAAATGGATGAGTGGACAACCATCTTCTCTACCAGGCCACAGCTGTGGAGTGCTAAGTCAGCTTTATGGCTCTGGATGGTCCACTGATGTTTGCTCTGAGAAGCATGGATATATCTGCCAAAGATGCCTCAATACCCCCACTGTTCCACCAGTTGTGAACACAGGTTCTTGCTACAGTCCGTGGATCCCTTACTCAGGACACTGCTACTTACTCAGTCGCACAAAGAGAACATGGCTGGAGGCGAGAGATGCCTGTCGACGTGAAGGTGGAGATCTGCTGAGCATCCTTAATGTAGAAGAACAAAGCTTCACCCTCTCACAACTGGGATACGCAAAGACAGATGAACTGTGGATCGGTTTTTATTACCTCAAGACTTCGATGCTGTTTGAATGGAGTGACCAATCCAACGTCCAGTTTACCTTGTGGGACGTGAATGAACCGAGCTATAATGCTGCCATTAAAGAAGACTGTGTGCTAATGAGAGGAGAGGAGGGCAAGTGGACTAATCAGATCTGTGATGACAGTTATGGATACATCTGTAAGAAAAAAGCAAATCCATCTTCTAGGGACGGTTTTGTCACAGGCCCAGGCTGCAAACCTGGTTGGGTCAGGTACGGCTATTACTGCTATCTAGCTGGATCAGAGACTAAGACCTTTGAAGAAGCCAAACAGATGTGTGAGAAAACTGGATCATATTTAGCAGACATTACAAACAGATATGAAAATGCATTCCTGGTCAGTCTAATTGGGGCAAGACCAGAGAAGCACTTCTGGATCGGTCTGTCTAATGCGAAGATTCGACACATTTTTCAGTGGACGAACACCAAGAAGGTTCCATTTACTCACTTCAACGCTGGATTGCCAGgaagaaggcaAGGTTGTGTTGCCATGACCACTGGAATACTCGCTGGATTATGGGATGTGTTGAGCTGCACTAATGCAGAGAAATACATCTGCAAGCAGAAAGCTGAAGGTGTCATCACAACTCCAGCCCCTCCAACCACTCCTGCTTTCACCTGCAAGAAAGGCTGGAATCCCCTAGCAGATAGAGATATTTGTTTTAAgCTGTTCCAGACAGAACCTAGTAAAAGGAAGACGTGGTCTGAGGCCCTGGACTTCTGCCGGGAACTTGGGGGGGATCTGCTCAGCATCCACAGTGCTGAATTTACAAATAGCCATTtacaaaaatgtcaGGCATGGATTGGCTACAGTATCCAGGACCCCTCTGCTGGTTACACATGGAGTGACGGTTCCTCTTCCTCCTATGAAAACTGGGACATTGGCGAACCAACCAATCTACACAATGCAGAGAAATGTGCTGTAGTGAGTTTTTTGCTTAGGACAGGAGTATGGATGGACAAGCAGTGTTCTGATAGACAAGACTGGTTTTGCGAGATCCGAAAAGGTGTGACTCCAAAGGAAGTAAACATCACAAGTAAAACATATAATAAAACAGATGATGGATGGATCATATTCAAGGATCATCAGTATTACATCTATAATGGTCTTTATGTCCCTATGGTGGATGGACAGAGCTTCTGCAGGCAAAGACATGGTGATCTTGTGTCCATTAATGATGAGGAAGAGCGGGCGTTTCTGTGGCATCAGTCTCTGCAACAACGGGCAGATTTTTATATTGGGATGTACATTGACCTGGACATGTCTCTTTCgtggatggatggatcgcCAGTGGTGTTCCAGGCATGGGCAGAAAATCAGCCGGCCTTCCACTTAGGTGTGGAGAGCTGTGTACGAATGTCTTGGTCTCATGGGCTTTGGGAAAGTGTGAACTGTGGTATTGTGGAGAAATCATTTATCTGTAAACGAAATGGATCTGTACCAGCTCATGCCACTGTTGCTCCCACTGAGCCCCCCATAGGAGGCTGCCCTCCGGACTGGGTGAAGTTTCAAGAAAAGTGTTTTAAGATAGGACTGGACCTGAAAACATGGAATGAAGCCAGATCATACTGTTGGACTATTGGAGGAAGCCTGGCCTCAGTTAAAAACAGACTCCATCAAGCCTTTTTGACCCTGATGATAACTGATGGAACACCAGATTTGTGGCTTGGCTTCAGTACTACACCGGGCAGAAGATGGGAGGCTCTATGGATTGATGGAAGTCCTTTCCGATACTCAGCCTGGGTCTCCTCCCACACTGCAGACAATTGTCTGGCAATGGCGGGATTCCAAAATCCTTTATTGGGAAAGTGGGTGCCAAAAAACTGCATGCACACCAGTGGTTATATCTGCAATCGTGCTATGAATCACTCGATCATCCCTAGGCCCACAGAGGTGCCCAGAACTTTCATCAAGCTTGGAAATTCTTCTTACATGCTCGTCCAAACCAACATGACCTGGAAAGAAGCTCAGAGTCACTGTCAGTCTGTGGGAGCAAACCTGGCCAGCATTCGGGACGTCTTTGCCCAGTACCACATTGAGCTACAGGCAGACAAACTTAAACAACCCATATGGGTTGGGCTGAACAGCATGAAGATACATGGATACTACCTGTGGATTGATAACTGGCATCTAAGTATGGAGAGATGGGCCCCTAATGAACCAAAAAGTGACCACCCCTGTGTTTATGTGGACGTAGATGGAATGTGGAAAACTGCCCAGTGCAATCAAACCTACTACAGCTTGTGTAAGAATTCAACAGATATGGCTCCACCTCCACCAACTCAGTACCCAGGTGTGTGCCCTAAACCGAGCATTGCTAATCCGAGAATGATATGGCTGCCGTATCGAGGCCACTGTTACGCATTCACATCCAGTGCAGAATCCTGGTTCACAGCGTCTAATCTCTGTAAGATAAGAGGAGGTGAACTCGTCAGCATTGTGGATTCAATGGAGGCCGAGTTCATAGCGAACAATGCCAGGTTACGGAAGGATAACTCCAACTATTTCTGGATAGGCCTTTACAAGACCCGCATAGGACACTGGATGTGGACAGACAACAGTGTTCTGGATTACGTTAACTGGAGTAAATCTGAAGAGGAACCTCCAGAACGTCACTCTGTATATAGATTTAGcccagaaaacacaaaaaactgtGCAGTGATTTCCTCCAGCACTGCAGAGTGGGAAAGGCGTGACTGTAAACAGGGTTTTCACGCTTATGTCTGCAAAACAGCCAAAGTTGTAATGCCGACAACAGAGCCGACAACTACAGTTTTTACAGGTACTGTTGGAACTCGCAGGTCGTTCAGTGGTGCATCAGTGGTCGTACTGATTTTAGTGATGTTCGTTTTGGCTGGATTGGTTTATGGCTTCATCAGAACCTCCAGAAAGCAGGCTTCCATGTCTGAGAACTCAATGCAGAGCACCAGAGCAGGTTTTGTTGTAGAGGATGAGGACACCATGGGACTGTTTAGTCAAACAGATGATAACGAGGAAGACCCTACTTTGTAATTTGCGAATATTT

Function

GO: NA

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678032.1 True 4377 mRNA 0.46 30 12056835 12121276

Neighbor

gene id symbol gene type direction distance location
LOC103032062 NA coding downstream 6392 11974748 ~ 12050443 (-)
LOC103031742 NA coding downstream 88434 11945426 ~ 11968401 (-)
LOC103027519 NA coding downstream 224571 11819859 ~ 11832264 (-)
trnad-guc_16 NA coding downstream 301236 11755528 ~ 11755599 (-)
rnf182 rnf182 coding downstream 483622 11568053 ~ 11573213 (-)
LOC103028177 LOC108437218 coding upstream 462601 12583877 ~ 12589743 (-)
stam stam,LOC107664071 coding upstream 475544 12596820 ~ 12612107 (-)
LOC103028809 colec12,LOC103028809,LOC108437226,LOC108267818,LOC107686068 coding upstream 496875 12618151 ~ 12703278 (-)
LOC103029125 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding upstream 619108 12740384 ~ 12822960 (-)
LOC103030941 lpin2,lipin2,LOC108413408,LOC107686047,LOC107584234 coding upstream 1326999 13448275 ~ 13509530 (-)
G140897 NA non-coding downstream 2679 12053861 ~ 12054156 (-)
LOC111194201 NA non-coding downstream 82191 11972057 ~ 11974644 (-)
G140887 NA non-coding downstream 94487 11957505 ~ 11962348 (-)
G140883 NA non-coding downstream 115169 11935869 ~ 11941666 (-)
G140882 NA non-coding downstream 125999 11927862 ~ 11930836 (-)
G141000 NA non-coding upstream 145891 12267167 ~ 12267708 (-)
G141013 NA non-coding upstream 212179 12333455 ~ 12335228 (-)
G141024 NA non-coding upstream 257659 12378935 ~ 12381531 (-)
G141136 NA non-coding upstream 616118 12737394 ~ 12818134 (-)
G141164 NA non-coding upstream 778966 12900242 ~ 12900443 (-)
G140772 fam134b other downstream 446306 11606235 ~ 11610529 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 1542028 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 1711337 10311097 ~ 10345498 (-)
G140342 NA other downstream 1953378 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 2342798 9697155 ~ 9714037 (-)
G140975 NA other upstream 52419 12173695 ~ 12174994 (-)
G141020 NA other upstream 227283 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 351528 12472804 ~ 12572147 (-)
G141220 NA other upstream 1194615 13315891 ~ 13316365 (-)
G141255 LOC108413406 other upstream 1315355 13436631 ~ 13438896 (-)

Expression


Co-expression Network