LOC103028579


Basic Information

Item Value
gene id LOC103028579
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12132187 ~ 12172466 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678033.1
GATTCAGAGGGAGGGTGGGTGTAGCTCTCGTCAGGACAGACAGTGTTCGGGATTATCAGGATGATGAAAGAAACGGCTGTTGTTGTCATTTTTCTTCATGTTTCTCACTGCTTTGCTCAGTCAGATGGGAATTTGTTGATCTACAATGCTCATAAGAACAGATGCCTGGGGAACATCCTGCAAGAACTAGAGGTGTGTGACCTCAGGAACCCGAGACAACAGTTCCGCTGGACGTCAGAGAACCGCATCTTCAATGTTGCTGAGAAGAAATGCCTCGGCACAGGGAACAAGAGTGAAGGCAGTAAACTGCAGTGGTATCAATGTGATGCCAACAGTGACCTTCAGAAGTGGGAGTGTGAGAACAACTCACTGTTTGGATTGAAGAACAAGACTCTGTACTTATCTAATTCACTAGTACTGTCCAGAGACCCAGGAGAGAAGGGCAAGTGGACTCTTCATGGAACGACGGACAGCATTTGCTCTCGTCCGTATGAAGAAATCTACACACTTAAAGGAAACTCGTTTGGACGCCCCTGCCATTTCCCATTCCTTTATAAAAACACCTGGTACACAAACTGCACTACTGGCGATCGTTCATTCAATCTTTCATGGTGTTCCATTGAAAGTGAATATGACCCGAATCAGCTCTGGGGTTACTGCCCACATCAGGAAATAGTTCAGCAGCTCTGGAGGAAGAACCCACTGACAGACGTTTATTACCAGGTGAATGAGGATTCTGCACTGACCTGGTATCAGGCCAGGAAGAGCTGTCAGCAGCAGGGGGGAGACCTGCTGAGCATCACTGAGCCCCACGAGCAGACCTTCATATCAGggtTGACTCAGAGGACCGGTCCAGTCTTGTGGACGGGGCTGAACAGTTTAGATGCTTCAAGAGGATGGCACTGGGTCGGTGGACAACCTTTCCGCTATCTGAAATGGATGAgcgGACAACCGTCTTCTCTACCAGGCTACAGCTGTGGAGTGCTAGATCAGTCTCATGACTCTGGATGGTCCACTGCTGTTTGTTCTGAGAGGCATGGATATATCTGCCAAAGATGCCTCCCTACTCCCACTGTTCCACCAGTTGTGCACACAGGTTCTTGCTACAGTCCGTGGATCCCTTACTCAGGACACTGCTACTTACTCAGTCGCACAAAGAGAACATGGCTGGAGGCGAAAGATGCCTGTCGGCGTGAGGGTGGAGATCTGCTGAGCATTCTCAATGTAGAAGAACAAAGCTTCACCATCTCACAACTGGGATACGCAAAGACAGATGAGCTGTGGATCGGGTTAAATGACCTTCATACTTCGATGCTGTTTCAGTGGAGTGACGACTCGAACGTTCGGTTTGCTTTGTGGGACGTGAATGAGCCGAGTCACAAGGCTGACCCAAAGGAAAACTGTGTATTAATGAGAGGAGAGGAGGGAAAGTGGGCAGATCAAATCTGTCAGAATAAGTATGGCTTTatctgcaaaaagaaaaaacacacagatccaTCCACTAACGACACTGTTATTACACATCCAGGCTGCAGACCTGGTTGGATCAGGTTTGATTCCTACTGCTATCGTGCTGAATCAGAGACTAAAACCTTTGAAGAAGCCAAAGAGATGTGTGAGAAAACTGGATCTTATTTAGCAGACATTACAAACAGGATTGAAAATGCCTTTCTGGTCAGTCTGACTGGAGCACAATCAGGACACTTCTGGATCGGTCTGTCCAACCAAGAGGATGTGCATGTTtttgaatggaccaatagcaACAAAGTTTTGTTCACACACTTTAATGCTGGAATGCCAGGGGGAAAACATGGTTGTGTTGGCATGACCACAGGAATACTCGCTGGATTATGGGATGTGTTGAGCTGCACTAACGTAGAGAAGTACATCTGTAAGCAGAAAGCTGAAGGGGCGATCACAACTACAACCCCCCCAACCACTCCCACTCCAAAGTGCAGTGTGGGCTGGAATCCAGTACCAGACAGAGACCTTTGTTTTAAGatttttaatccagtaaCAGAAGCGAAGAAGACGTGGTTTGAGGCTTTGGACTACTGCAAGGAAGTTGGGGGTGATCTGCTGAGCATCCATGGCCCTTCATATTTTGAAGAATTTCAATATTCATCAACAGCATGGATTGGCTACAGCATCCAGGACCTCTCAGTTGGTTTTACGTGGAGTGACGGTTCCTCTtCCTCCTATCAAAGCTGGCAGGAAGGGGAACCAGACAATTTAAACAATATGGAAAAATGTGCTGCAGTTACTTATGAATACTGGCGCAACTCTGAGACTGGAGAGTGGAGAGACATGCAGTGTGGAGACAGACTGGACTGGCTTTGTGAGATTCAAAAAGGTGTGACTCCAAAGGAAGTAAACATCACAAGTAAAGtgtataatacAACTGAAGATGGCTGGATTATTTTCAACGGAAATCAGTATTATTTCTATAACGATGAATCTGTCCCTATGGTGGAAGCACGGAGCTTCTGTAAACACAGACATGCTGATCTTGTGGTCATTAATGATGAAAGTGAGAGACTGTTCCTGTGGCATCAGAGTAAAGACAAACGACCTTATTCCTACATTGGGATGATTGTTGATCTGGACAAGTCTATTTCgtggatggatggatcaccAGTGGTATTCCAGGCATgggcagaaaacgagccaaccTTTCTCTACAGCGAGGAGCAATGTGTTGCGATGAGTTGGCCTCATGGACTTTGGGAAAGTGTGAACTGTGgtctaaaaataaagtttatctgTAAACGAAGTGAAGCTGTCCCGGCCCATGCCACTGCTGCACCCACTGACCCCCCTACAGGAGGCTGTGCTGACAACTGGCATAAACTACAGAAACAGTGTTTCAAGATAGGCCTGGATCTGAAAACCTGGGATGAAGCAAGATCATACTGTAGGAGTCTTGGAGGAGATTTAGCATCCATTACTAACAGTCTTCAGCAAGCATTCTTGACCCTGATGATGGATGACAGAGGCCCAGATTTATGGCTTGGCTTCAATAATTTGGCGGACAAAGGCTTTAGATGGACCAATGGAAGTCCTGTTCTTTACACAACCTGGAGAAAAGGCAATACGGGTGGGTCTTGTGTTGCTATGGAAGGTGGTTCAAATCCTGATATGGGACAGTGGGTTAAAAAAGACTGCAACAGCAAAAATGGTTATATTTGCAGTGCCGCTATAGATCAACAAATCACCTCAAGTCCTAAAGAGATGCCTAAAACTTTCCACCATGGAAATTCATCTTACATTTTAATCCAAACAAATCTGACCTGGAAAGATGCGCAGAGTCACTGTGGGTCTTTGGGGGGAAACCTGGCCAGCATTCGGGATGCTATCACTCAGTCCTACATGACTGTGCAGGCGCACAACTTCAAACATCCCCTGTGGATTGGCCTGAACCTTATGGAGACATATGGGTACTTCCTGTGGATTGATAACTGGCAGTTAAACCTGGAGAGGTGGGCCCCTAATGAACCCAAGAAAGACCACccctgtgtttatgtggatATAGATGGAACATGGAAAACGACAATGTGCGATCAGATTTACTACAGTGTGTGTAAACAGTCAACAGGTGTTGTCCCGACTCTACCTGTTCAGTTCCCGGGCGTTTGCCCCCAGGAAAAAGAAGATAAACCAAGGATGATCTGGATGCCCTATAGGGGGCACTGTTACGCATTTGTATATGGGAGTGAATCATGGTACACAGCTTCTCGAACGTGTATGACAAAAGGAGCTGATATTCTTAGCATTGTAGATCCAAAGGAGTCTGCATTCATAGCGAACAGCCTCAAAATCTTTGGGGATGACTACAGCCTTTTCTGGATTGGCTTGTTCAAGAACAAAAAAGGACACTGGCTTTGGCATGACGAGAGTGTGGTGGATTATTTGAACTGGGATGAAAATGCAGAGGAATTTTCAGGTGATCATTATGAATCCTATGATATCGGTTGGTCAGATGGAAGCGACTGTGCAGTGATTTCAACTGCTACTGGACAGTGGGAAAAGAGGCGTTGTAGATACACGCACATACCCTTCATCTGCAAAAAAGCCAAAGttATAAAGCCGACCACAGAACCAACTCCAACAGCACGTGCAGTCACAGGTGTGGCTCACAGGTCATTCAGTGGGGTTTCCGTGGCTGTGCTGATTGTGGGGCTGTGCGTTTTGGCTGGACTATCTTATGGCTTCTACAGAACCTCCAGAAAACAGGTTTCCACGTGTGAGAGTCCAGCGGAGGACACCGGCGAGGCTCTTCTTACAGAGAATAAAGACACTAAAGCATTAGTTACTCAAATGGAGATTAATGAAGAAGCCCCAGCATTGTGAATAGATTTATATGTTTTGAGATAATTGAACTACCTATGTGTTCTTTTGGATGTTTCATATAGACGTGTGTTTAAGACATTGagctatatttttgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678033.1 True 4446 mRNA 0.46 30 12132187 12172466

Neighbor

gene id symbol gene type direction distance location
LOC103028056 NA coding upstream 204439 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 336343 11784077 ~ 11795844 (+)
lrrcc1 lrrcc1 coding upstream 350598 11755661 ~ 11781589 (+)
LOC103026935 ralyl coding upstream 378102 11672608 ~ 11754085 (+)
LOC103030795 NA coding upstream 476779 11644036 ~ 11655408 (+)
LOC103027534 NA coding downstream 7221 12179687 ~ 12464647 (+)
LOC103030385 LOC108437225 coding downstream 535644 12708110 ~ 12732368 (+)
LOC103030306 NA coding downstream 1220911 13393377 ~ 13437203 (+)
rgs20 rgs20,LOC108440656 coding downstream 1623928 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 1693821 13866287 ~ 13882845 (+)
G140896 NA non-coding upstream 78032 12053916 ~ 12054155 (+)
G140843 NA non-coding upstream 159658 11971104 ~ 11972529 (+)
G140829 NA non-coding upstream 201354 11929641 ~ 11930833 (+)
G140830 NA non-coding upstream 241516 11875270 ~ 11890671 (+)
G140796 NA non-coding upstream 290289 11837173 ~ 11841898 (+)
G140938 NA non-coding downstream 68859 12241325 ~ 12241835 (+)
G140944 NA non-coding downstream 94702 12267168 ~ 12267634 (+)
G140928 NA non-coding downstream 176119 12348585 ~ 12349268 (+)
G140955 NA non-coding downstream 272264 12444730 ~ 12446783 (+)
G140957 NA non-coding downstream 295870 12468336 ~ 12469122 (+)
LOC111194237 NA other upstream 653447 11455485 ~ 11478740 (+)
G140659 NA other upstream 748682 11380098 ~ 11383505 (+)
G140520 NA other upstream 1333296 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 1687647 10427266 ~ 10444540 (+)
G140402 NA other upstream 1732211 10395520 ~ 10399976 (+)
G140931 NA other downstream 65522 12237988 ~ 12240625 (+)
G140930 NA other downstream 206530 12378996 ~ 12381554 (+)
G141086 NA other downstream 569007 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 670332 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 1683137 13855603 ~ 13858605 (+)

Expression


Co-expression Network