LOC103030385 (LOC108437225)


Basic Information

Item Value
gene id LOC103030385
gene name LOC108437225
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12708110 ~ 12732368 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678038.1
CATCACCCTCACCCTACATACTGCAAAGACCTTTACAACAACAGACCCCATACAGACAGGAAGCAATCAGAAGGTTCTGAAACAGACAGTTCCAGTGTGGAGAGGCTGTGAAGGAGGACAGGATGAGGGCACTGCTGTTCTCCCTGGCTTTGCTGGCCTCTCTGCAGGCTTTCCAGGCCGCCTCTGGTCCCAATCCAAAAGCTGTATCAGCGGACACTCTCAAACGACTGTCTTTAGAAGGAGAGAAGCTTGTGGATGAGGAGGTAAGGAGAGCCCTCTATGGTGTTAAGCAGATGAAAGAGGTGATGGCCAGAAACGAGGAGAAGCACGAGCACCTGATGAAGTCCCTCCGGAACAgtggagagaagaagaagGGGGCAGCAGAGATGGCTGAGGATGTGGTAAAGAAGTTGGATGAGGCAGAGCAGCACTGTAAGGACAGTCTGAAGTCTGCCTGGGAGGAGTGCAGGCCCTGTCTGGAGGACACCTGCAAGAACTTCTACACCAACAGCTGCCGGCGCGGCTTCGCCACATTCTCCAATAAGctAACAGGCTTCTTCCGCAGGGTGAGTGCCCGCTTTGGCTCGCGAGATTCTCGGGATGAGCTTGAAATGAACCAGAGTGATGGGAGCCCTGAACTGGATGCTGTGAAGATCGAGGAGTCGTTCAGCTCCCTGCTGACTAAGGTGGGCAACCTGGTGAACCGTAGCATGGTGCTGGTGTCCCGCTTCCATAGGCAGCTGGACCAGGCGCTGCGGAAGGCCTTCGTTCCAGAGCTTCAGGAGGCGGAGGACAGTGTGGCGCTCATCCCTATGCCTGGAGATGACCTGGACTCTGCCTACCTGCAAGGTGTGGGCTTGGATGACGTGCTGGAATCCTTCTTTGACTTTGGAAGGAGTTTGACGGAGGAGTTCAGTGCAGTGGTCACCCAGGCGTTTGGCAACGTGCACAGCGCATTGGAGgaggcagagaaagaaagagAGAAGCAGCTGTTTCCAGTGTTCTTCCACAAGAGGAAGCTGTGCAGAGATCTGCGCAGACAGTCTGCAGAGTGCTGGCAGCTCCAGAACAAGTGTGAAGCCTGCCAGGGAACCCTGCTCGCTGagTGTCCGAGTGTACGGGAGCTGCACGTTGAGCTAGACGAGGTGTCGGAGCTGCTGGAGGTCTCTAAGCAGCAGTATGAGGAGGTGCTGGGCATCGCGCAGCGTCACACCGAGGACACTGTGGGCTGGCTTAACAACATGGCTGCAGAGTTCGACTGGGTGGCTGAGCTGGTCCACGACAACACCACGCCAGAGAACATCTTCAGCATCACCAGGGTGGTGACTGAAGAGGATGCTAACATGCCAGCAGCAGAAACCAAGGTGGAGGTGAACATCCTGAACGCTCCACCTCTTTCCCTCAGTGTGCCTGCAGGACTGCAGCTACAGGACCCCGCCTTCATCCAGTATGTGGCTCATGAGGCTCTGGGGCTGTATAAGCAGAAGTCCAGGCAGGAAGATGCTTGAGGCTGCCTGCAGGAGAAACGTCACTTTGCGCCTGGATAAAGTACAGTTCACCTGTAGCGTATATGTAAAagtattatgtagtaaattatttaaacatgtgaagactttttattgcattgtatttatcttagatatacagtattttgtcatTCAATATACACTGATCTATACAattccaaaagtcatggaacattGTCTCTTGCTTATCTGTTGGCATTGGACAATTCTAGACAGACACAGCCGGTCTCAAAATTATTACCACCAACGGATCTGGCCGCTCTGGGTGGTAAATGTCTTCtgtagccctatccggatgggattagtatctaaaaaacatgaggaccagtgagttttttggctttctcgatcacatgacatcatcgcgttcagtagcttaATTACAGTGTGTGGCAGGGGACAAACAGCTATCTTAGTAAACATGAGgcgacaaaactcagagatgtgcgtccggatgggaataaaatgaCCGGAGGACCatagagttcagcaaaaaacagtcgGTAATTCAGTGAGAAAAAcgcgtacatggtcgttctggaagggaataaaatcacagaggaccacccataaaagagaaaattaccccaggaccccctaagaaactaatcccgtccggctAGGGCTTATGATGTGTTACCGGTAAACATGTGACACTTTGGCAGGGCTCCAGACAAAattttttctcagctgtccCAAAGATTTATAGACGCCATCCCGAACTGAAAATCATCcgtccaaattttttttggtttctttttatttttgttgtttcttcCTTGACTATATGCAACTCCTACTCTTGCAATCTTACTAGTAACCTGATTGGCTCCATGATAAaaggcagattttttttctttatctgtaaacagacTTTGGGCTAAGTAATAGGAAAACATACAGTCATATTTTAATCAGCAGATTATCTCCTCATAAACATCGTATAACCAGTTTCACTGCACACATATTTGTCATCCAGAAAAAGTTTTATTCTCGTGCTAAAAGCGCTATTATTACCGTCTCCAGGACAATGGGACCATGTTAGTCTGGAGCCCTGTTGTAGATCGAGGATCGAGATCAAGTTAAATCCTGCTACAGAAATTACAGAAAATGGAATGTCCATCCATTTGGCACACACCATTAGTCCTTTCtacgccttgccatgagcatgttggccaTTCTTTAACCTCtctcacaagatatcaccttGTTAATTTATAAAGAAGTGGGTGCTCTGAGGTAACACTTGATCACATGATCACATTCATAATTATATACTGCCCTTCCATGAACTTTGGCGCGTCGGTGTATATCAGGGTACAAAGAGTTAAGAATTAATTTGCTCATTATATCACTTACATTTCAAAGCATATAACATGTATTTCGGAAGTCAAGACTcttctgtaataaataaagtgtcAAACACAAGCTGATAATACA

Function

NR:

description
PREDICTED: clusterin-like protein 1

GO:

id name namespace
GO:0008219 cell death biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678038.1 True 2966 mRNA 0.48 9 12708110 12732368

Neighbor

gene id symbol gene type direction distance location
LOC103027534 NA coding upstream 243463 12179687 ~ 12464647 (+)
LOC103028579 NA coding upstream 535644 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 780362 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 912266 11784077 ~ 11795844 (+)
lrrcc1 lrrcc1 coding upstream 926521 11755661 ~ 11781589 (+)
LOC103030306 NA coding downstream 661009 13393377 ~ 13437203 (+)
rgs20 rgs20,LOC108440656 coding downstream 1064026 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 1133919 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 1168540 13900908 ~ 13918612 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding downstream 1205917 13938285 ~ 14142611 (+)
G141075 NA non-coding upstream 96020 12611298 ~ 12612090 (+)
G141074 NA non-coding upstream 98608 12608646 ~ 12609502 (+)
G141046 NA non-coding upstream 221539 12486280 ~ 12486571 (+)
G140957 NA non-coding upstream 238988 12468336 ~ 12469122 (+)
G140955 NA non-coding upstream 261327 12444730 ~ 12446783 (+)
G141087 NA non-coding downstream 5874 12738242 ~ 12785737 (+)
G141099 NA non-coding downstream 82499 12814867 ~ 12816236 (+)
G141178 NA non-coding downstream 252499 12984867 ~ 12990434 (+)
G141185 NA non-coding downstream 298404 13030772 ~ 13033593 (+)
G141188 NA non-coding downstream 308422 13040790 ~ 13041271 (+)
G140930 NA other upstream 326556 12378996 ~ 12381554 (+)
G140931 NA other upstream 467485 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 1229370 11455485 ~ 11478740 (+)
G140659 NA other upstream 1324605 11380098 ~ 11383505 (+)
G140520 NA other upstream 1909219 10798545 ~ 10798891 (+)
G141086 NA other downstream 9105 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 110430 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 1123235 13855603 ~ 13858605 (+)
G141410 NA other downstream 1448297 14180665 ~ 14200998 (+)
G141495 NA other downstream 1795772 14528140 ~ 14530296 (+)

Expression


Co-expression Network