LOC103030306


Basic Information

Item Value
gene id LOC103030306
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13393377 ~ 13437203 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678039.1
AAACTTTcctcctcactctctccctcacttctCCTCACTCCTCTAACTCTCCGCAGGTCTGTGGGATGTTCAGTGGGGTTTCTCGAAGCTGTGGGGAGGTTTAGCTCGGCCGgactgcgctctctctctgtggttctGCGGGTTATGTGGGTTTGAGTCGGTCAGTGATGGCCTGCAGCGGGTTTTCTGTGTTAgctcttgtgtttttgtggaGTTTTTGTGGAAGTCCAGCAGCTTCTCAGCAGCACCGACACGGCAACAAGAACTGGTGTGCCTTTATCGTGCAGAAGAACGTGAGCTGCGCAGTTCAGGCGGGTTTGGAAGTTCCCGCAGAGGCTGCTCCCTGTCCCATGAACCAGCCGGACTGCCAGCACCAGATGAGGTATCGGACCCATTTTCGACCCACTTACAAGATTTCGTACAAGACTGTTACTGAGCTTGAATGGAGATGCTGCCCAGGGTACCAAGGTCTGGACTGCAAAGAGCTGAAAGGAACACCGAATAGACAGACGTTGGTTGAACATCAGCCTCAGTCTCACCCTCAGCCTCGACACACTGGATACACAAGAAATGCACAAAGGGCAGAGCGAAGAGAGACAGGGCAATATTACAGCCACCACAGAACTGAGAAAACCCGTCAGCTTGAGGAAGACGTGCAGCGCCTTTCCCAAACAGTGCTGGATCTTCAATCAGCCATGACTAACATGGCTTCTAATCTGAGGACCGACCTTCAGGAGGACACCAGCAAAATGCTGTCCACTCTCCTCAACAACATGGGTTTACCTGATAGCGCCAGAGCAGTAGGCACTGAAGAAAGCGCAGCACATCTGGACGGGCACCTGGCCACTAGGGGTCTCACTCAAGGAGAAAGGGGCATGGAGGAAGTTCTTGCCAGGCTTGATGATGTGACGAATGCTTTAAAAAGCAAAGAAGATGTGATTGAGGAGCTGCGTGACACAGTGACCGGACACAATGGGCAGATTCGAATGCTCATGGATGCTTCTCAAGGGCCGGCGGTCACTCCTGGTGCCTCGACAGACATCGATATCCTTCAGGCTTATGTAGACAGCAAATTtgagaagctaaagaaagaACTGGTCGTGGACATGGAAGATCAGATTAACAAGTTAAAGAGTGAATGTGACGACCGGATCCTGGCTCTTCAGAAAACATGTGAAGAGGGCCAGGAAAGAACTTATGCGAACCTTAGCAAACTAGTAGAACGCAAGGAGTCTGAGCTCAGGAAGGACATTCGTGAGTTGCAAGTGAATATGGTCATGTCGGATGGAGTTGTACGCACTCAAAGGCAACCAGCTCTGCTGAAAGATGATGGTGATCACAATGATCTAAGGCAGGCGCTTCAGCGAGTGGCGGACGCTCACCGAGTCCTTAATGCTCGGGTGGACAATGAACTGGCACATTTGTCCATGCTGCAGCTGGAAGACATGTTTGGGCCTCGCATAGAAGAGCTGGAGGCACGGATGAACGTGACGGAAAAGAACGCAGAGACGTACTGCTTCTACGTGGAGGAGAAGCTAACCAAGGAACTTGCGGATGAGATAGCGAAGATTCACGAGCTCATGGATGAGAAATTGACTTCTATGGAGGATCAGTTCACGGCCATGCTAGTTGAGATGAGCAACAACTCCTTCCCAGGAATGTTCAGCGATTCCGTAGACGGTCTGCAAGTTCAGGTCAACTCCAACAAGTATCTCATTGAGGGATTGGAGAACAAGTTGAGTGCCATTGGGCAGGTATGCTCAACGAACTGCAAACCAAGCCAATCGATTGATCCTCAAAACCTGGGAGGTCTTGACACTATTGTTAAGGATGTCAAGCACTGTAGAAACAACCTGGATGTCTTGAACACTGACGTGGAGCAAAATACTGCAAAGCTTGTCGAATTAGAGAGCATTTTGGAACGCCTTTCCATCGAGAACCAGCAAAACGTCGTCAGCAAACAGGACCTCAACAACAGGTTGAAACCTCTGACAGACAATGTCGATGGCCTGACTGGAGCTGTAACAGGGTTAGGAGACTCCATCAGCAAGTTTAGCCAAGACCTTCTAGCTCTTAACTCCAGTTGCTGCCTACCAGGAAATGTAGGTTTGGTCCAGAGACCAACAGGTTTACCTACTCTCTTTCACGGAACAGGCAAACCAAGTCCCAACCAGGTAGAGGAACTCCGAGACAGGCTAGACAAGCTCAGCTCCCAGGTGACGGCAGAGCTGAGCCTGTGTAAGCAGAATGCAGCAGGGATAGCTGAAGGTGTCTCCACAGTGAACGGAAGAGTGACTACCCTGGAGAAGTTGTGTGGGAAGCTGGATGGTGAGACGAATCAAATTCAGGAAATAAAAGAAGGGCTGAAGAGAGACTTGGCACAATTGGGCTCTATTCTGCAGACACATTCTGTGGAGATTGGAACCCTCCAGAACAACCTGCTCAACTTTCAGAAACAGTTCGCAACGCTCAAGGATCAAACCATGAAGCAACAAGGAATGCGAGTAAGACAGGAGAGACCTGCTGTGGTCCCAGACTCTGAGACTCTGCACGTCCCTGAGATCCACATCCCTCTGATAATAACCCACAGGACAGTGCCAGTAACACCTCGTCCTCCCCGTCCTCGTATTCCTTACATTCTTCAACCACAGCAGCCCAGCCGCCCTCAACAGCCCAGCCGCCCAAGCCTGCATCAGCCCGTCCACGAGGTTGGGGAGGCTGGACCCCCAGGCTGGAACAGCAGGACGTACGTCAGACGCGAGCGCGGATCTGAGAATTCTGGAAAGCCGATGCAAGGATTCGCTGGTGCACCAGGCTATCCTCACGCCCGGCCTGTGGCATATAAACCAAATCCAATTGCagtttctCAAGCCACATGGAATCCTGCACAAAGACTTGTCGCCACACCAGTTGCATCAGAGAGAGACTCGTTTGTGGAGCCCTTCTCCTTCTCTGCCGCTCTCACAGAGCAGGCTTTCTCAGGGGACTTTGGCATCATCCGTTTTAACAGGGTGCTGGTCAATGATGGAGGACATTATGATTCCCAAACAGGAGTCTTCACTGCGCCTGTAGACGGACGCTATCTGGTCACAGCGGTCCTGATGGCAGCGCGGCGTGAGCGAGTGGAGGCCGTGCTCTCCGTGTCCAACCGCAGCGTGCAGAAGCTGGACACCGCGGGTTACTCCGGGGCGAGCGGACACCTCGCTCCGCAGCCGTGTACGTGCGGAGGCTCCGCCTCCTTCAGCCTCATCCTCCCGCTGCGGGCGGCCGACCGTGTGTCGCTGGTGCGGACGGCAGGAGCGCTGGCCATCTCCGACGCCAAGGAGATCCTCTCTACCTTCAGCGCGGTCTTCCTCTATTCGCCTCAGGCCCGGAGATAGCCTCcagccagagagagaaaaagagagagagagagagagagagagagagaggtatagaaaGAGAGGTGGATGCTGAAAGACTGTTAACACTAACTCTCGGCAGCCTGTTCCAAGTCGGGGTACACTGCAAGAAGAACAGCGCGCAGGCATTTCTCAAACTTCTAGATTGGTGACAAATCTAATTCTGACTTTTCCTTTATTCAAATGTTAGTCAATATATGTTGCATGGCCAAAAATATGttgacacacatatat

Function

GO: NA

KEGG:

id description
K24246 EMILIN; emilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678039.1 True 3635 mRNA 0.52 9 13393377 13437203

Neighbor

gene id symbol gene type direction distance location
LOC103030385 LOC108437225 coding upstream 661009 12708110 ~ 12732368 (+)
LOC103027534 NA coding upstream 928730 12179687 ~ 12464647 (+)
LOC103028579 NA coding upstream 1220911 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 1465629 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 1597533 11784077 ~ 11795844 (+)
rgs20 rgs20,LOC108440656 coding downstream 359191 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 429084 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 463705 13900908 ~ 13918612 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding downstream 501082 13938285 ~ 14142611 (+)
LOC111194316 NA coding downstream 778907 14216110 ~ 14219347 (+)
G141221 NA non-coding upstream 58985 13333927 ~ 13334392 (+)
G141195 NA non-coding upstream 181023 13136766 ~ 13212354 (+)
G141200 NA non-coding upstream 188114 13204894 ~ 13205263 (+)
G141189 NA non-coding upstream 278359 13099086 ~ 13115018 (+)
G141188 NA non-coding upstream 352106 13040790 ~ 13041271 (+)
G141275 NA non-coding downstream 109191 13546394 ~ 13547636 (+)
G141285 NA non-coding downstream 148625 13585828 ~ 13586433 (+)
G141291 NA non-coding downstream 150149 13587352 ~ 13587825 (+)
G141292 NA non-coding downstream 150887 13588090 ~ 13588459 (+)
G141311 NA non-coding downstream 210658 13647861 ~ 13648072 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 533050 12842798 ~ 12860327 (+)
G141086 NA other upstream 649924 12741473 ~ 12743453 (+)
G140930 NA other upstream 1011823 12378996 ~ 12381554 (+)
G140931 NA other upstream 1152752 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 1914637 11455485 ~ 11478740 (+)
G141361 tcea1 other downstream 418400 13855603 ~ 13858605 (+)
G141410 NA other downstream 743462 14180665 ~ 14200998 (+)
G141495 NA other downstream 1090937 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 1341978 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 1617454 15054657 ~ 15056973 (+)

Expression


Co-expression Network