LOC111194316


Basic Information

Item Value
gene id LOC111194316
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14216110 ~ 14219347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678044.1
CCAGGCGTGATCCTGAAGTGGGTTTTCTCCTCTATATTAGAGATTCTGTAGCTGCGGGTCTTCAGTGTAGAAACACTGCAGACTGTTGGAGATTAAAGTGGATTCAGAGCTGTTTATTGTATTTGATCAGATCCAGAAACCGGTGTTTTCTGTGGTTTAAATGAAGATATTCTATGTAGGGTAAAACTGAGGGGTGATTAGATGTGATTTACTCCTCTGGTCTCTTCAGTAAAGCGGAGCAGCAGAAGGTAGATCAGCTCTGATCATCAGATCCACATCTCTGTACTCAGACCTCTGATCTGCAAGAACTTCATCAGCTCAACAGCTGCAGATGGATTCTGTCCTATTCCAAGACTTCCCCTGATCCAAGTGTCAATTTTAAAACCTGGATTAATTGTAGCTTCATAGCTGCTGAACAAAGAGGTGAATATGGCAACCAGAGAAATCTCCAAAACTCAGCAGATTTCATCACCTGCACCTCAGAGTCAAATACAGAAAAGTACAGACAAGAAGAAAACTCACCTCTGCTCAgaatgtggaaagagttttagatATCCCAGCTATCTCCagcaacaccagcgcattcacagtGAAGAGAACCCATTtcagtgctcagactgtggaaaaaaCTTTAATGATTCACGTGTTTTCCAGCAACACaggcgcattcacactggactGAAACTGTATtgctgttcagactgtgggctTAGTTTTAATCATAAGGGTACTCTCCagcgacaccagcgcattcacagtGGAGAGAAACCCTTTaagtgctcagactgtggaatgaGCTTTAATCAACACAGTGCTCTTCagcgacaccagcgcattcacactggagagaaaccatatcactgcttagactgtgggaagagttttactcataAGATTACTCTCCAGCGGCAtgagcgcattcacactggagagaaaccatatcactgtttagactgtgggaaaagttttacacaacagAGTGCTCTCCAGCGACACCAGCGCagtcacactggagagaaaccatattatTGTTCAgcgtgtgggaagagttttaatcagctGAGACCACTCCAAatccaccagcgcattcacactggagagaaaccatatgaCTGCTCAGAGTGAAAAGAGCCTCacgggccagttgttcaaaatgtaatccggatcaaaattatccagatttggtaatcacattttttgctatccagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678044.1 True 1209 mRNA 0.44 2 14216110 14219347

Neighbor

gene id symbol gene type direction distance location
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding upstream 73499 13938285 ~ 14142611 (+)
gpr141 NA coding upstream 297498 13900908 ~ 13918612 (+)
LOC103040707 NA coding upstream 333265 13866287 ~ 13882845 (+)
rgs20 rgs20,LOC108440656 coding upstream 369159 13796394 ~ 13846951 (+)
LOC103030306 NA coding upstream 778907 13393377 ~ 13437203 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 37525 14256872 ~ 14269906 (+)
scrib scrib coding downstream 53482 14272829 ~ 14408400 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding downstream 232993 14452340 ~ 14458287 (+)
LOC103039460 LOC108268156 coding downstream 242643 14461990 ~ 14472520 (+)
LOC111194238 NA coding downstream 258207 14477554 ~ 14488421 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding upstream 1846 14210460 ~ 14214264 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding upstream 7294 14202989 ~ 14208816 (+)
LOC111194315 NA non-coding upstream 17463 14182044 ~ 14198647 (+)
G141413 NA non-coding upstream 25057 14185207 ~ 14191053 (+)
G141406 march6,LOC107664076 non-coding upstream 42678 14172226 ~ 14173432 (+)
G141467 NA non-coding downstream 3216 14222563 ~ 14236652 (+)
LOC111194202 NA non-coding downstream 221558 14440905 ~ 14442332 (+)
G141501 NA non-coding downstream 265673 14485020 ~ 14486617 (+)
LOC111194203 NA non-coding downstream 297999 14517346 ~ 14518444 (+)
G141514 NA non-coding downstream 326450 14545797 ~ 14547039 (+)
G141410 NA other upstream 15112 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 357505 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1355783 12842798 ~ 12860327 (+)
G141086 NA other upstream 1472657 12741473 ~ 12743453 (+)
G140930 NA other upstream 1834556 12378996 ~ 12381554 (+)
G141495 NA other downstream 308793 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 559834 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 835310 15054657 ~ 15056973 (+)
G141791 NA other downstream 1009363 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 1166269 15385616 ~ 15401904 (+)

Expression


Co-expression Network