Gene
RNA
| Item | Value |
|---|---|
| gene id | scrib |
| gene name | scrib |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035912.1 |
| NCBI id | CM008315.1 |
| chromosome length | 41032606 |
| location | 14272829 ~ 14408400 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| scrib | Enables protein heterodimerization activity. Acts upstream of or within several processes, including establishment of mitotic spindle orientation; morphogenesis of an epithelium; and nervous system development. Located in membrane. Is expressed in brain; neural tube; and secondary posterior lateral line primordium. Orthologous to human SCRIB (scribble planar cell polarity protein). |
| description |
|---|
| PREDICTED: protein scribble homolog isoform X12 |
| id | description |
|---|---|
| K16175 | SCRIB; protein scribble |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_022678049.1 | False | 10226 | mRNA | 0.50 | 47 | 14272829 | 14408400 |
| XM_022678050.1 | False | 10223 | mRNA | 0.50 | 47 | 14272829 | 14408400 |
| XM_022678051.1 | False | 10169 | mRNA | 0.50 | 46 | 14272829 | 14408400 |
| XM_022678052.1 | False | 10165 | mRNA | 0.50 | 46 | 14272830 | 14408400 |
| XM_022678053.1 | False | 10163 | mRNA | 0.50 | 46 | 14272829 | 14408400 |
| XM_022678054.1 | False | 10150 | mRNA | 0.50 | 46 | 14272830 | 14408400 |
| XM_022678055.1 | False | 10117 | mRNA | 0.50 | 45 | 14272830 | 14408400 |
| XM_022678056.1 | False | 10114 | mRNA | 0.50 | 46 | 14272830 | 14408400 |
| XM_022678057.1 | False | 10260 | mRNA | 0.50 | 48 | 14272829 | 14408400 |
| XM_022678058.1 | True | 10278 | mRNA | 0.50 | 48 | 14272829 | 14408400 |
| XM_022678059.1 | False | 7414 | mRNA | 0.54 | 48 | 14272829 | 14405544 |
| XM_022678060.1 | False | 10090 | mRNA | 0.50 | 46 | 14272830 | 14408400 |
| XM_022678061.1 | False | 10081 | mRNA | 0.50 | 46 | 14272830 | 14408400 |
| XM_022678062.1 | False | 10185 | mRNA | 0.50 | 47 | 14272829 | 14408400 |
| XM_022678063.1 | False | 10015 | mRNA | 0.50 | 45 | 14272830 | 14408400 |
| XM_022678064.1 | False | 9970 | mRNA | 0.50 | 45 | 14272830 | 14408400 |
| XM_022678065.1 | False | 10049 | mRNA | 0.50 | 46 | 14272830 | 14408400 |
| XM_022678066.1 | False | 9834 | mRNA | 0.49 | 46 | 14272831 | 14408400 |
| XM_022678067.1 | False | 9774 | mRNA | 0.49 | 45 | 14272831 | 14408400 |
| XM_022678068.1 | False | 9759 | mRNA | 0.49 | 43 | 14272831 | 14408400 |
| XM_022678069.1 | False | 9726 | mRNA | 0.49 | 44 | 14272831 | 14408400 |
| XM_022678070.1 | False | 8975 | mRNA | 0.50 | 43 | 14272832 | 14407857 |
| XM_022678071.1 | False | 8918 | mRNA | 0.50 | 42 | 14272832 | 14407857 |
| XM_022678073.1 | False | 9702 | mRNA | 0.49 | 42 | 14272831 | 14408400 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103037989 | puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 | coding | upstream | 2923 | 14256872 ~ 14269906 (+) |
| LOC111194316 | NA | coding | upstream | 53482 | 14216110 ~ 14219347 (+) |
| LOC103035806 | ctnnd2,ctnnd2b,LOC107746909 | coding | upstream | 130218 | 13938285 ~ 14142611 (+) |
| gpr141 | NA | coding | upstream | 354217 | 13900908 ~ 13918612 (+) |
| LOC103040707 | NA | coding | upstream | 389984 | 13866287 ~ 13882845 (+) |
| LOC103039154 | LOC103039154,LOC108440646,LOC108268154 | coding | downstream | 43940 | 14452340 ~ 14458287 (+) |
| LOC103039460 | LOC108268156 | coding | downstream | 53590 | 14461990 ~ 14472520 (+) |
| LOC111194238 | NA | coding | downstream | 69154 | 14477554 ~ 14488421 (+) |
| LOC103041924 | NA | coding | downstream | 80031 | 14488431 ~ 14500190 (+) |
| LOC111194240 | NA | coding | downstream | 103393 | 14511793 ~ 14512939 (+) |
| G141467 | NA | non-coding | upstream | 36177 | 14222563 ~ 14236652 (+) |
| G141459 | fam173b,LOC108440663,LOC106941709,LOC107578923 | non-coding | upstream | 58565 | 14210460 ~ 14214264 (+) |
| G141415 | march6,LOC107686038,LOC107746911,LOC105900596 | non-coding | upstream | 64013 | 14202989 ~ 14208816 (+) |
| LOC111194315 | NA | non-coding | upstream | 74182 | 14182044 ~ 14198647 (+) |
| LOC111194202 | NA | non-coding | downstream | 32505 | 14440905 ~ 14442332 (+) |
| G141501 | NA | non-coding | downstream | 76620 | 14485020 ~ 14486617 (+) |
| LOC111194203 | NA | non-coding | downstream | 108946 | 14517346 ~ 14518444 (+) |
| G141514 | NA | non-coding | downstream | 137397 | 14545797 ~ 14547039 (+) |
| G141516 | NA | non-coding | downstream | 144233 | 14552633 ~ 14553089 (+) |
| G141410 | NA | other | upstream | 71831 | 14180665 ~ 14200998 (+) |
| G141361 | tcea1 | other | upstream | 414224 | 13855603 ~ 13858605 (+) |
| LOC103029537 | adcyap1b,LOC103029537,LOC108437223,LOC107713980 | other | upstream | 1412502 | 12842798 ~ 12860327 (+) |
| G141086 | NA | other | upstream | 1529376 | 12741473 ~ 12743453 (+) |
| G140930 | NA | other | upstream | 1891275 | 12378996 ~ 12381554 (+) |
| G141495 | NA | other | downstream | 119740 | 14528140 ~ 14530296 (+) |
| b4gat1 | b4gat1,LOC107747893,LOC107745213,LOC107696735 | other | downstream | 370781 | 14779181 ~ 14784812 (+) |
| G141740 | LOC108440267 | other | downstream | 646257 | 15054657 ~ 15056973 (+) |
| G141791 | NA | other | downstream | 820310 | 15228710 ~ 15285457 (+) |
| G141754 | pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 | other | downstream | 977216 | 15385616 ~ 15401904 (+) |
