LOC103034870


Basic Information

Item Value
gene id LOC103034870
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18753807 ~ 18785358 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678151.1
GACTCCGCCCACTCTGGAGTTTGGAGCGCCTCCTATCTGCTCCTTATCTCCTCCAGAGCTGAGTGTGTGCTGAGGGCTGGGCAGGGACAGTTAGTCCGGGCTGGAATACAGACTGCAGGGGCTTTCTGGACCTATTGTCTGGAGCTATTGTCTGAAGAGCTGTTGTCTGGATTGTGTGGAGTTATTGTTTGGAGTTGGAAATGAAGAAGCTGCTCGTGATCAGTTTGGGTTTGATCCTCTCAGCAGTGACGATAATCCTAGCTGATCcggatggaggaggaggagagcagACACTCAGACGGCAGAAGAGGGAGTGGATCATCCCTCCGAGGAAGCTCATGGAGAACGTAGATTACACCAACCTCAAATACATCGCCAAGATCCGATCAGACGAGGAGACCAGGACCACCATCCTGTACTCTCTGAAAGGAAAAGGAGCAGATGAAGAACCAGTGGGATTATTCCAGGTGGACAGACTGCAGGGCTTAGTGACCATCCACGGCATATTGGACAGAGAGACGACTTCTTCTTACCATctGCTGGGCGTGGCCAAGTTCCAGAACGGCAGTTACGCCGAGAAGGACATTGATCTGAGGATCGAGGTTCAGGACCAGAATGACTGCAGTCCAGTCTTCAACATCCAGGCTGTGGGTTCTGTCTATGAACTCAGTGAAACAGGTACCTACATCATTAACATCACAGCGACTGATGCAGATAAGCCAAACACACCGCACTCACAGATCGCCTACAGCATCGTTGAGCAGAGTCCAGCCGGGAACCTGTTCTACATCGACCGTGGGTCCGGCAAGATCTTCGTCAGTAGGAGTAGTCTGGACAGAGAGGTTCAGGAATCATACACGCTGAAAATCATAGGCTCAGACATGAACGGACAACCAGGGGGAAACACAGGGACGGGAACTGTGAGCATCAACGTTCTGGACGTCAACGATAACGTCCCCACTTTGGAGAAGAACTCTTACGAGGGcagtgtggaggagaacattaagAGCGTGGAAGTGATCCGGATCCGGTCTTTTGACCGTGATCAGATCCACACAGATAACTGGAGAGCTGTGTACACCATCGTCTCCGGAAACGAGGCCGGTTACTTCACCATCACCACCGACAACGAGACTAACGAGGGCATCATCATCCTCAATAAGGAAGTGGACTATGAGGAGATGAAAGAGATAAACCTGCAAGTGACCGTCTCCAACAAAGCAGCATATCACTCCTCGGTGGTGATCAAACAGCCGCAGACCTACCCCATCAAGATCAAAGTGATCAACGTGCCCGAGGGCCCTCGCTTCCAGCCCTCCGTTAAAGTCATCTCACTGTCTGAAGACAAGACCATCATCGACCTGAAGAAAGTCATAGCCACCTACACAGCTATCGACAGCGATACGCTCACAGCTGCTACTAACGTCAGATATGTGAAAGGAGAAGATGCTGACAACTGGTTAATCATTGACGAGAAAACTGCAAATATCAGACTCAACAAAGTCCCGGATCGGGAATCTACATTCCTCATTAATGGAACATATTACGCCAAAATCCTCTGCATTACTAACGATTATCCAATCAAAACTGCGACAGGAACCATCGCAATTCAGGTGGAGGATTTTAACGACCACTGTCCAATCCTGACCAGCTCTGCTCAGACCATGTGTTTGGGAGACAGCGTTGTGTACGTCACAGCTACAGACGTGGACGAGTTCCCCAATGCAGAGCCTTTCCTCTTCAGACTGTTCTTCCAGAGCAAAAAGGGGAAGTGGACTGTGGAGCGCCTCAATGAAACGACAGCCATTCTGCGCTCTCAGGAGATGCTGTGGCCCGGGCATTACACCGTGGGTCTGGAGGTGGAGGACCAGCAGGGGAAGGTCTGTGGTGAACAGTTTGTTCACGTAACGGTGTGCACCTGTAACAATGACAAGGTGTGTCTGCCGAAGAGACGTGGATCAGAGGTGGTGTTCGGAGCAGCTGGAGTTCTGGTCATGCTGCTGGGACTGTTGCTTCTGCTGTTGATTCCTCTGCTCCTGCTGTTCTGCGTGtgtggaggagctgcagctgctgccGGATTCAAAGCTTTCCCCACTGAACAAACCCAACACCTCATCACCTACCACACCGAGGGCCAGGGAGAGGATAAGGACATCCCACTGTTGCAGGTCCCCACAGAGCTGGACGCTGGGATCAAAACGGGGCACGTGGAAGGCCTGGGAGAGAAAGGGCACTGGGGAGCTGGAGGATGGGGCGGAGGAAGAGAAGATGGCATGATGAACACCAGAGAAGATTGGCACTTCAACGAGCATTTCAATGACTTCAACGGCAACTACAATTCCATGTTTGTAACCGGAGGTCACGCTGGACGTGGGAGAATGGGAGCGTTTGAAGGCATCGCACTGTCTGAAGCGTTCTTGGGTGACTACTATTCAAAGaAGTCGAACTTCATGGCGGAGCACCAGGCTGCCGGCGAAAGCCTGCTGGTCTTCGACTTTGAAGGGGAAGGCGGTAACGCGGGTCCACTGGATGACATCTGCGCCGAGCTGCATGACGGAGACGACTTGGCGTTCCTCAACGACCTCGGGCCACAGTTCAGGGCGCTGGCCGAGCTTTGCCGGGGCTCGGCCATCGATATTGAGGTCAGCTCGGTCAAAAAGCCACCTGCACCTGAACCAGCCCCAGCAAGGGTTCACCTAAATGTGAGGGAAGAAGGTAGCAAGGGTGGTTTACGCACTGAGGTGGGCAGCTCTTCGTCCACCTcagcttctgcttctgcttcagtttcaGCTTCTGCATCATCCTCCAGCACTCATATGACCTCCATGGATTATCGCCAGAGCGGCACAGCATCAACAGCAGTATCTACAGCAGGTGTGTTGACCCATACAGTGCCCAGCCAAACCCTGCTGATCCAACAGCCAGCGGTGTATTACACCTCCACTCCAGTCTACGTGGTGGACCCCAAGCCTCAAGCCACTCTGCTGGTTGCATCCGGACCAGTCCTTGGCATGCAGGAGAACGTGGTGCTGGTGGACCAAAGAGGAGGGAGCCTAGTTCAGGGAGCATCCACACTGGGGAAGCTAAATCAAACCCAAACCAAGGTGCTGCTGGAGAAGAAGCCAGTCAGAGGAGCTGCAATTGTTGAGGGCAGTGGGCCACAGGTGCTCCTAGGACATTCCGAGGTCGGTTCGGGAAGCGTCCGGATTGTGGAATCTGGAAGAGTACAGACTATGGAGCCTGTACGTACAGTGCAGAGCTCTTTACACTCCAGCATCAGCGAAGGTCAGAGCATCCAACTTGGCCAAGGGCTCACAGGGTCTCACAAAAGTCTCGCAGTGGCGCAGCATGAGCAGCCACTATTGACTGTTCCACATGCACATGGTGGTACTCACCAAAAAGTTCGGGAAGAAAGGATTTCCGTCATTGAGAAAAGTTTCCAGTCCAGTGCTGCAGTCTAATGCGGCTTAACTGACACGAATAcaaatattaattgatttgttggGTTCAGCTTCAAGGACGTTTCTACTTGTGCAAAATAGGCTTTCTAGATTCTACAGGgtttgtcattttagtgtgggaggtttcatggctaaattagagcatactggtggtcaatcttcattaattgcacattgcaccagtaagagcaagagta

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K07597 DSG2; desmoglein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678151.1 True 3658 mRNA 0.52 14 18753807 18785358

Neighbor

gene id symbol gene type direction distance location
LOC111194332 NA coding upstream 1449716 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1749003 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 1813439 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 3254302 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 3277592 15443821 ~ 15476215 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 9545 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 36060 18821418 ~ 18826143 (+)
LOC111188235 NA coding downstream 145521 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 184528 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 309408 19094766 ~ 19119530 (+)
G142360 NA non-coding upstream 38011 18715579 ~ 18715796 (+)
G142359 NA non-coding upstream 41392 18709438 ~ 18712415 (+)
G142344 NA non-coding upstream 62848 18615188 ~ 18690959 (+)
G142348 NA non-coding upstream 119397 18633047 ~ 18634410 (+)
G142342 NA non-coding upstream 145297 18606788 ~ 18608510 (+)
G142368 NA non-coding downstream 23519 18808877 ~ 18809481 (+)
G142369 NA non-coding downstream 27620 18812978 ~ 18813382 (+)
G142372 NA non-coding downstream 41770 18827128 ~ 18827985 (+)
G142371 NA non-coding downstream 42989 18828347 ~ 18831508 (+)
G142377 NA non-coding downstream 68042 18853400 ~ 18854020 (+)
G142166 LOC108436878 other upstream 1549314 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1680323 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1768512 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1785857 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3351903 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 70878 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 80092 18865450 ~ 18870317 (+)
G142620 NA other downstream 950948 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1417290 20202648 ~ 20220149 (+)
G142820 NA other downstream 1997225 20782583 ~ 20790122 (+)

Expression


Co-expression Network