LOC103047721


Basic Information

Item Value
gene id LOC103047721
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18969886 ~ 18987441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678160.1
TTTctgacagtgtttaaaaaagattATCTCAGGAATTCACAGAGATATCAGTATTAGGAGATCAGGGATTGCTAAAGCTCTGTGCTCTGAGTTATTCTGGACTCTGGCTCAGAGAAGAACACTTTCAGCTGAAACCAAAACTTACAGAAGCATGTCTGTCTTGAGCGAAATCAATCCAGACGTGAGGAGAATCAAAATCTCGGAGCATGACATCTTAGACGAACGAGCAGAGCAAATTCGGACAGAGATTAGACAGGGTTTGGTAAAGCGTTATAAAGATGTTATTGATGTCTCTTCTGGAAATCCTCATGGAATGGGATTGAAACCCCTTACCTTTGTTCGTCAGGTCCTGGCCACCTGCTTCTACCCTCCCCTTGTTCACGATGAGAGTTTACCCCTGGACGTGAGACAGAGGGCCCAAAGTCTTCTGGCAGAATGTGATGGCGAGAGCATAGGTTCATATCCTGCTACATATGGAATGAAACACGTGCGAAGCAGTGTATCCACATTCATCACCAGGAGAGATGGTGTTGTGTCCGATCCTGACAACATCATTATCTCGAATGGTTCCCAGCATGCTCTAATACTAATATTGAAGCTGTTGGTTCAGGGCCGGGGTTTACAGCAGACAGGGGTCCTCACCCCCGTGCCCTGCTACCGCAGCTTTAACAAGGGTCTCGTCGCTCAAGGTGCGGTCTCGGTGCCGTACTACCTGTGTGAAGAGCAGGGCTGGACGGTGCAGGTGGAGGAGCTGCGGAGAGCCCTCCAGGCTGCTAGGGGGCACTGTAACCCAATGGTGTTATATATCATCAATCCAGGCAATCCATCAGGTCATGTGCAGAGTAAGGCCTCTATAGAGGAGGTGATTCGCTTTGCTGCAGAAGAGAGGCTCTTCATTATGGCAGATGAGGTGTACCAGGGCTGTGTGTTTGGGAAGGACAGTGAGTTTTATTCGTATAAGAAGGTGTTGTCTGAGATGGGACCTCCGTACTCCACTAACGTGGAGCTGGCCTCCTTCCACTCCGTCTCCAAAGGATTCATGGGAGAGAGTGGTCTACGCTGTGGTTACGTGGAGATGGTGAACCTTGACCCGCAGGTAATGCGTTACGCTTACCAGGCCTTCTCCTTTAACGCCCTGGCGTCCGTGCCCGGACAGATCACCCTGGATGTGATGCTTAACCCTCCACAACCTGGAGATCCTTCATATGCTGTCTATGCTCAAGAGGTCAAGTCAGTTATGAGTGCAATTAAGAATAATGCACAGAGGATTATGGATGTTGTCAGCGGCTTGCCTGGCATGACTTGCCAACCCATAAATGGAGGGATCTTTATGTTCCTGCGCCTGCATTTATCCAAGGCTGCGATTGAACACGCCGAGGAGAAAGATCTAGAACCTGATCTGCTGTATAGCATGAGGCTGCTGGAGGACACAGGCCTGTGTGTGGCACCTGGATGCGAACTCAGACAAAAACAGGGCACCCACCACATCAGGATCTGTCTGGCAACCCCAGAAGAGATAATGGAAGATGTTCTGCACAGGCTGAAGAGTTTCCACCTTCGCTTCATAAAAGAGTTCCCCTAATTAGTGTTTGCCGATCAGATAAAAGGCTGCAATCAGAGATCAGATTTAGGATttttcaatataatatataatttgtcttatataatattcaaaattttctgagatactgatttggGGGTTttcacctatttttttttcGATAACCCACATAACCTGTTCATAAGtactcacacactgctctattaATTCCCAGTATCATTCAGTGTTTAAGCACATGTTATATGATTTCATGTACGTAGGTAGATATCAAAGAAAGTGTTGAAAGAATAAACATCAGTCAATCATACGTTTTCTTTATAGCTTCTTTACATTTGAtacaattaatcaaattattagTTCAATACATTCCAACACAATAAATAAGCAAACGCACTTTAAACATGTCTTATCTTTTTGTGGTAATGATATAAACACCAACTCTACAACTAGGAAGACTTTTATCTTCAAGATAAGATTATCTTCTGCTCTCAGTGCAAAAccaggtattaaaaaaaaaaaaa
>XM_022678161.1
TTTctgacagtgtttaaaaaagattATCTCAGGAATTCACAGAGATATCAGTATTAGGAGATCAGGGATTGCTAAAGCTCTGTGCTCTGAGTTATTCTGGACTCTGGCTCAGAGAAGAACACTTTCAGCTGAAACCAAAACTTACAGAAGCATGTCTGTCTTGAGCGAAATCAATCCAGACGTGAGGAGAATCAAAATCTCGGAGCATGACATCTTAGACGAACGAGCAGAGCAAATTCGGACAGAGATTAGACAGGGTTTGGTAAAGCGTTATAAAGATGTTATTGATGTCTCTTCTGGAAATCCTCATGGAATGGGATTGAAACCCCTTACCTTTGTTCGTCAGGTCCTGGCCACCTGCTTCTACCCTCCCCTTGTTCACGATGAGAGTTTACCCCTGGACGTGAGACAGAGGGCCCAAAGTCTTCTGGCAGAATGTGATGGCGAGAGCATAGGTTCATATCCTGCTACATATGGAATGAAACACGTGCGAAGCAGTGTATCCACATTCATCACCAGGAGAGATGGTGTTGTGTCCGATCCTGACAACATCATTATCTCGAATGGTTCCCAGCATGCTCTAATACTAATATTGAAGCTGTTGGTTCAGGGCCGGGGTTTACAGCAGACAGGGGTCCTCACCCCCGTGCCCTGCTACCGCAGCTTTAACAAGGGTCTCGTCGCTCAAGGTGCGGTCTCGGTGCCGTACTACCTGTGTGAAGAGCAGGGCTGGACGGTGCAGGTGGAGGAGCTGCGGAGAGCCCTCCAGGCTGCTAGGGGGCACTGTAACCCAATGGTGTTATATATCATCAATCCAGGCAATCCATCAGGTCATGTGCAGAGTAAGGCCTCTATAGAGGAGGTGATTCGCTTTGCTGCAGAAGAGAGGCTCTTCATTATGGCAGATGAGGTGTACCAGGGCTGTGTGTTTGGGAAGGACAGTGAGTTTTATTCGTATAAGAAGGTGTTGTCTGAGATGGGACCTCCGTACTCCACTAACGTGGAGCTGGCCTCCTTCCACTCCGTCTCCAAAGGATTCATGGGAGAGAGTGGTCTACGCTGTGGTTACGTGGAGATGGTGAACCTTGACCCGCAGGTAATGCGTTACGCTTACCAGGCCTTCTCCTTTAACGCCCTGGCGTCCGTGCCCGGACAGATCACCCTGGATGTGATGCTTAACCCTCCACAACCTGGAGATCCTTCATATGCTGTCTATGCTCAAGAGGTCAAGTCAGTTATGAGTGCAATTAAGAATAATGCACAGAGGATTATGGATGTTGTCAGCGGCTTGCCTGGCATGACTTGCCAACCCATAAATGGAGGGATCTTTATGTTCCTGCGCCTGCATTTATCCAAGGCTGCGATTGAACACGCCGAGGAGAAAGATCTAGAACCTGATCTGCTGTATAGCATGAGGCTGCTGGAGGACACAGGCCTGTGTGTGGCACCTGGATGCGAACTCAGACAAAAACAGGGCACCCACCACATCAGGATCTGTCTGGCAACCCCAGAAGAGATAATGGAAGATGTTCTGCACAGGCTGAAGAGTTTCCACCTTCGCTTCATAAAAGAGTTCCCCTAATttttcaatataatatataatttgtcttatataatattcaaaattttctgagatactgatttggGGGTTttcacctatttttttttcGATAACCCACATAACCTGTTCATAAGtactcacacactgctctattaATTCCCAGTATCATTCAGTGTTTAAGCACATGTTATATGATTTCATGTACGTAGGTAGATATCAAAGAAAGTGTTGAAAGAATAAACATCAGTCAATCATA

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678160.1 True 2082 mRNA 0.45 11 18969886 18987441
XM_022678161.1 False 1817 mRNA 0.47 12 18969886 18987227

Neighbor

gene id symbol gene type direction distance location
LOC111188235 NA coding upstream 37741 18930879 ~ 18932145 (+)
exosc4 exosc4,exos4 coding upstream 143743 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 153489 18794903 ~ 18816397 (+)
LOC103034870 NA coding upstream 184528 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1665795 17235199 ~ 17304091 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 107325 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 438553 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 1100855 20088296 ~ 20115213 (+)
mep1b LOC108439312 coding downstream 1236335 20223776 ~ 20245141 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 1569325 20556766 ~ 20574038 (+)
G142397 NA non-coding upstream 12824 18951214 ~ 18957062 (+)
LOC103030232 NA non-coding upstream 39398 18923993 ~ 18930488 (+)
G142385 NA non-coding upstream 74879 18866307 ~ 18895007 (+)
G142382 NA non-coding upstream 98987 18864191 ~ 18870899 (+)
G142380 NA non-coding upstream 109145 18860351 ~ 18860741 (+)
G142401 NA non-coding downstream 3748 18991189 ~ 18994237 (+)
G142416 NA non-coding downstream 132811 19120252 ~ 19121602 (+)
G142432 NA non-coding downstream 183086 19170527 ~ 19170796 (+)
G142434 NA non-coding downstream 225925 19213366 ~ 19219047 (+)
LOC111194334 NA non-coding downstream 242728 19230169 ~ 19282116 (+)
G142378 gpaa1 other upstream 76377 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 99569 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 1765393 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1896402 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1984591 16972202 ~ 16985295 (+)
G142620 NA other downstream 748865 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1215207 20202648 ~ 20220149 (+)
G142820 NA other downstream 1795142 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 2581641 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 2611241 21598682 ~ 21611682 (+)

Expression


Co-expression Network