LOC111194335


Basic Information

Item Value
gene id LOC111194335
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19425994 ~ 19431174 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678166.1
GCTTTTCATCAGTATTTTACAATTTTGGTTATCCAGTTTAGTCTTgtcatttagttattattattccagTGTAAGTTAATTTGTAATGTGTTGTTCAAAatcatattaacattttctttcaattaATATTGTACCTGCAGGGTAGTGGCGGGTAAATTGAGGGCTGTGTGAGTGGAGAACACTCCAACTTTCATCTTGTTCAGGCAGAGTCTCCTTACTTTCAGAACTAGCTGTTGCAGTGGACAGAATAGGCCTTAGGTCAGCTTAGGAGGAGGACAGACTTGACTGGTTTGAATGCTGGTGTCATCAGAGAGAAACAACATTCTGCTTGACCAAGGCTGTGATGATGTCAGGCCCAATTCAACTACGTGTTGTTATTGAAGATAGTCAAGTTCACAAGTTAGTCCTAGCAGGTGGAATCCCAAGCACTGTAGATGAACTTCTGGCAACAGCCCAGAATCATTTTCATCTCCAAGGGAGTTTTACTGTTATGTACATGGACAAAGATTTTGATGACCAGTTCTTCACTCTAATGTCAACCGATGTGATTAAGGACAAAGACACAATCAAATTGGTTAAAACAGAACCGTCTGTTGTTCTAACATTTACTCCCCTCTCTGAGACTGATGCTTCCTCCCCAGCAGCGTCACTGGATCGGTCTTTCCAGGATGATGGTTCTTCAGTGAGTTCATCCGACACAGTCATTATACAACAGCCCCCAGAGCATCGATCTCAACCATGGCCTGTTGATTTTGTGGTTCCCACCTTTTCATTTAATGTGGAAATGCTCCTCCAAGCAGGATGCAAGGCTTATGAAAGTGATGGATCACTCCTTCAGAATCCAAGCATAAACTCTGACATACTAGAGAAACTTGCTGAAGCAATATTCCACTACACTGCCTACCCCACTGGTCTGCAAATACAGGCAGTTGTAGAATCTCTGATCAACAAGTATCCATGCTTAAAAGAGCCTGGAACCTCCTTTTCTGGAATGTATGGGTGGCAACAGCGTCTAAAGTACAAGATGGCAAACTACCGTTCTAAAATGAGAAAACGGGTACCTTATCCTGAGCTTGATATCAACTCCTTGAAAAGGAAGTCCCCTGGTGAGAAAAATCCTGCTAAAAATTGCAAGAGACCGAAGAGGGCAGAAGTGAACTACCTTCCTCCACACCCAAGTGGAGAAACGAGCAACAGTCTGGAGAAGGAAAGACAAGAGCTTCTTAATGAAGTAAAGAGGAAGAACAACACCAAGGTTATTCAAGACAAAATGGCCAAAACGTTCTCCTATCGAAGGATTGAGGTTGTGAGTGGTAGTCCAGCGGCGGATGAGTTCAGAGAGAGATGGCCTGCTTTGTTTTGTGAAGCTGAGATCAAAGAGGAATTCAGGAGAATAACTACGGTTTCCTTAGAGCAGACCTTCATGCGCAAACTTGACTACTACACTCCAAAACTTCTTGCCCTGATGAAGGCCAAAGGAGGTGTCGTGGGGACCAAGCTGAGACCACACTTGGACAAAATGTGTCAGGATCAAAGCATTGAAATGAGACGAGATGCTATTATCCGCAGCCTCATACTGTACCTTggtgagaaagaagaagaacttTTTAAAGATTGCCTGGTAAttccttttttctattttcaacAGTACAGTTTAAAATTGATGTGCaagtttactttaaaattaacagtGGAAGGCATGAAGCGAGCTTAGTCATAAATGGTCAAAATCTTATATTGAGGGGAGGGAGGTGGGGTAAGTATATTCTCAAGAATTGCAAACCAGCACAGTTAACCGTCCGTACAAATTTCACTGTAAA
>XM_022678167.1
GGTTGCCTGACTTTGCAGAAATACTGCAAATTATTGTTGTTCAAGACAGCTTAGTTTTTGTAGTCAAATTGCATAGTGCGTGGTACTTTGAACATTTTAGATGGTTTAAGCTGGAGTCCACAAGCATAGTCAAGGTAATAGACCAGTCAGAACTTGCTGACACATACCCATTGGCTGCCTATGCTGTGGAAGGCAATCGAATGGTTTCTCTGAAACACCACATCTGCTTATCAAACTAGACATTCTGCTTGACCAAGGCTGTGATGATGTCAGGCCCAATTCAACTACGTGTTGTTATTGAAGATAGTCAAGTTCACAAGTTAGTCCTAGCAGGTGGAATCCCAAGCACTGTAGATGAACTTCTGGCAACAGCCCAGAATCATTTTCATCTCCAAGGGAGTTTTACTGTTATGTACATGGACAAAGATTTTGATGACCAGTTCTTCACTCTAATGTCAACCGATGTGATTAAGGACAAAGACACAATCAAATTGGTTAAAACAGAACCGTCTGTTGTTCTAACATTTACTCCCCTCTCTGAGACTGATGCTTCCTCCCCAGCAGCGTCACTGGATCGGTCTTTCCAGGATGATGGTTCTTCAGTGAGTTCATCCGACACAGTCATTATACAACAGCCCCCAGAGCATCGATCTCAACCATGGCCTGTTGATTTTGTGGTTCCCACCTTTTCATTTAATGTGGAAATGCTCCTCCAAGCAGGATGCAAGGCTTATGAAAGTGATGGATCACTCCTTCAGAATCCAAGCATAAACTCTGACATACTAGAGAAACTTGCTGAAGCAATATTCCACTACACTGCCTACCCCACTGGTCTGCAAATACAGGCAGTTGTAGAATCTCTGATCAACAAGTATCCATGCTTAAAAGAGCCTGGAACCTCCTTTTCTGGAATGTATGGGTGGCAACAGCGTCTAAAGTACAAGATGGCAAACTACCGTTCTAAAATGAGAAAACGGGTACCTTATCCTGAGCTTGATATCAACTCCTTGAAAAGGAAGTCCCCTGGTGAGAAAAATCCTGCTAAAAATTGCAAGAGACCGAAGAGGGCAGAAGTGAACTACCTTCCTCCACACCCAAGTGGAGAAACGAGCAACAGTCTGGAGAAGGAAAGACAAGAGCTTCTTAATGAAGTAAAGAGGAAGAACAACACCAAGGTTATTCAAGACAAAATGGCCAAAACGTTCTCCTATCGAAGGATTGAGGTTGTGAGTGGTAGTCCAGCGGCGGATGAGTTCAGAGAGAGATGGCCTGCTTTGTTTTGTGAAGCTGAGATCAAAGAGGAATTCAGGAGAATAACTACGGTTTCCTTAGAGCAGACCTTCATGCGCAAACTTGACTACTACACTCCAAAACTTCTTGCCCTGATGAAGGCCAAAGGAGGTGTCGTGGGGACCAAGCTGAGACCACACTTGGACAAAATGTGTCAGGATCAAAGCATTGAAATGAGACGAGATGCTATTATCCGCAGCCTCATACTGTACCTTggtgagaaagaagaagaacttTTTAAAGATTGCCTGGTAAttccttttttctattttcaacAGTACAGTTTAAAATTGATGTGCaagtttactttaaaattaacagtGGAAGGCATGAAGCGAGCTTAGTCATAAATGGTCAAAATCTTATATTGAGGGGAGGGAGGTGGGGTAAGTATATTCTCAAGAATTGCAAACCAGCACAGTTAACCGTCCGTACAAATTTCACTGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678166.1 True 1820 mRNA 0.42 5 19425994 19431174
XM_022678167.1 False 1740 mRNA 0.43 4 19428842 19431174

Neighbor

gene id symbol gene type direction distance location
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 306464 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 438553 18969886 ~ 18987441 (+)
LOC111188235 NA coding upstream 493849 18930879 ~ 18932145 (+)
exosc4 exosc4,exos4 coding upstream 599851 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 609597 18794903 ~ 18816397 (+)
ripk1 NA coding downstream 657122 20088296 ~ 20115213 (+)
mep1b LOC108439312 coding downstream 792602 20223776 ~ 20245141 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 1125592 20556766 ~ 20574038 (+)
LOC111194337 adcy1 coding downstream 1180321 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 1284370 20715544 ~ 20774155 (+)
G142453 NA non-coding upstream 3532 19419660 ~ 19422462 (+)
G142450 NA non-coding upstream 8311 19413632 ~ 19417683 (+)
LOC111194334 NA non-coding upstream 143878 19230169 ~ 19282116 (+)
G142434 NA non-coding upstream 206947 19213366 ~ 19219047 (+)
G142432 NA non-coding upstream 255198 19170527 ~ 19170796 (+)
G142455 NA non-coding downstream 257 19431431 ~ 19432138 (+)
G142458 NA non-coding downstream 1500 19432674 ~ 19433057 (+)
G142603 NA non-coding downstream 90503 19521677 ~ 19521888 (+)
G142614 NA non-coding downstream 262762 19693936 ~ 19696283 (+)
G142619 NA non-coding downstream 293271 19724445 ~ 19728971 (+)
G142378 gpaa1 other upstream 532485 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 555677 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 2221501 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 2352510 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 2440699 16972202 ~ 16985295 (+)
G142620 NA other downstream 305132 19736306 ~ 19868292 (+)
rnf138 NA other downstream 771474 20202648 ~ 20220149 (+)
G142820 NA other downstream 1351409 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 2137908 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 2167508 21598682 ~ 21611682 (+)

Expression


Co-expression Network