mep1b (LOC108439312)


Basic Information

Item Value
gene id mep1b
gene name LOC108439312
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20223776 ~ 20245141 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678174.1
TAACTCCATCAGATCAAAGCCAGATTCACTCAGCAGAGCTCCAGCTCCTCACCGTGCTTTCAGCATGAGGAACACGGCTgcagtctctgtgtttattatttatactctATTAACTCTTCTCACCTCTCAAATCAACTGTCTGCCAAAACCCAAAGTGCCCAAGGTCATAGAGTTTGATGTGGATGCTGGAAAAGAGGATCTCTTTGATGTGAATGACGCTGCTGGTCTGGATCTTTTTGAAGGAGATATTGTATTTGagAAAGAAGGACGCAATTCCATAATCGGGGAACAGTACCTGTGGCCAAAGACGGTTCCATACTACTTTGAGGATGATTTGGATATCAATGCCAAAGGTGTTATAATGAAGGCCTTTGAACAGTATCGCCTGAAGACGTGCATTGACTACACACCCTGGAGTGGAGAGCAGAACTATATCTCTGTGTTCAAAGGCAGCGGGTGCTTCTCCTCTGTGGGGAATCGTCATGTTGGGAAGCAGCGGTTGTCCATCGGTGCAGGATGTGACCGAATCGCCACTATTGAGCACGAGTTCCTCCACGCTCTCGGCTTCTGGCACGAGCAGTCCCGCTCTGATAGAGACGATTACGTCACCATCATGTGGGATCGCATCTTAGAAGGCCGAGAGCACAACTTCAACAAATACGACGACACCACCTCCAGCAATCTGAACGTACCCTACGACTATGGTTCCATGATGCACTACAGCAAGAACTCCTTCCGTAACGGCACCGAACCCACCATCGTCACCAAGATTCCCGCTTTCCTGGACGTCATCGGCCAACGCATGGAGTTCAGCGACAGCGACCTGCTGAAGCTCAACAGGCTCTATAAATGCTCACGTTCCTCCACTTTTCTGGACACCTGTGACTTCGAGCAAGAGAATATTTGTGGGATGATCCAAGGTGCCGATGATCAGGCGGACTGGGAACGTGTTGCCAGAGCAGCTGGTGGTCCAGACACTGACTTTTCCAACATGGGGCGCTGTTCTGgTACAGGTTACTTCATGCACTTTATCACCTCCAGCGGCACCCCAGGCCACACAGCTCTGTTGGAAAGCCGACTGCTGTACCCTAACCGAGGCTACCAGTGCCTGCAGTTCTTCTATTACAACAGTGGAGACCCCACTGACCAGCTGGCCATCTGGGTGCGGGAGTACGACGAGGCCAATCCTAATGGTACACTGCGCTTCATCCAGCAAATCAATGgACCTCCCGAGGACCAGTGGCAGCTCCACCACGTCAGTTTGAACGTTTCCAGAAAGTTCCGCGTGGTGTTCGCAGGCACCAAAGGCTCTGAGAGCTCCATTGGAGGGCTTTCCTTGGATGATATCAATTTATCAGAGACCACCTGCCCAGAACATATATGGCGGATCAAAAACTTTAAGGATGTGATTGAAAACACACCGATGGGCACTGCCGTTTACAGCCCACGCTTTAAATCCAGTTACGGCTACAGCTTCCAGATGGGGCTGTACCCCAACGGCACTGAGTCGTCTCCTGGGGAGCTCGGAGCCTACGCCCACCTGACGTCCGGGGACGATGTGGTCGATGCTGGGCTTGTCTGGCCGTGTCCATGGAAACAGATGACCATGATGCTGATGGACCAGCACCCGGACATCCGCAAGCGCATGTCCAACCAGAGGAGCGCCACCACTGAGCCTGAAGCAACAATTGAAGGGTCTGGGATGTTTTTCTGGGATGATCCGAGGAAGGTGGGGGTGGAAGTGACAGAGGAGGGCGGGACTAAGTACTTCCGGGGTCCTGGAGCAGGAACATCTGTATACCTGACCCAGGCCAGAGCTCTCAGCAGAGATTTCATCAAGGGTGGAGATGCCTTCTTCCTTCTCACCATGGAAGATATATCCCACCTGGTGCCTTCACAGCCCCTCCCCCCAACTACAGTCCCGCCTACAAATGAAACTACAACTCCTCCCACAAATATAACTGCCACAACCTCTACAGCCTCTCCTACCACTGGATCTACCACATCTGGATCCACCACATCTGGATCCACCACAACTCCCCAGCCTACCATAACCACATTACCCCCCCATGACCCGTGCTCCACAGTGACGTGTGAAAACGACGGGGTGTGTGTAAAGGAAGGTGCCACACAAGCCGTGTGCAGGTGTGCAGTTGGTGACGACTGGTGGTACTATGGAGTCAAGTGCCAGTTTAAGAGTTCCAGCCAGGAGAACGTGGTGACGGCGGCCGTGGCCTCAGTGGTGGTCTTCGCCGTCATGCTGATCGTGACGGTGGTGAGCGTGGTCTGTCTGAAGAAGAAGTACATGAAGAAGATGGGCGATATGGGTACCGGAATAACCATGCAGAATTTATCAGCAAAACTTCCATcgtaaagctttttttttttttat

Function

NR:

description
meprin A subunit beta-like

GO: NA

KEGG:

id description
K08606 MEP1B; meprin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678174.1 True 2392 mRNA 0.52 14 20223776 20245141

Neighbor

gene id symbol gene type direction distance location
ripk1 NA coding upstream 108563 20088296 ~ 20115213 (+)
LOC111194335 NA coding upstream 792602 19425994 ~ 19431174 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 1104246 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 1236335 18969886 ~ 18987441 (+)
LOC111188235 NA coding upstream 1291631 18930879 ~ 18932145 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 311625 20556766 ~ 20574038 (+)
LOC111194337 adcy1 coding downstream 366354 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 470403 20715544 ~ 20774155 (+)
LOC111194340 NA coding downstream 558159 20803300 ~ 20812844 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding downstream 643822 20888963 ~ 21008006 (+)
G142726 NA non-coding upstream 83377 20138126 ~ 20140399 (+)
G142610 NA non-coding upstream 106326 20116757 ~ 20117450 (+)
G142656 NA non-coding upstream 126542 20043103 ~ 20097234 (+)
G142619 NA non-coding upstream 494805 19724445 ~ 19728971 (+)
G142614 NA non-coding upstream 527493 19693936 ~ 19696283 (+)
G142765 NA non-coding downstream 153612 20398753 ~ 20414640 (+)
G142769 phactr1,LOC108239648,LOC107383912 non-coding downstream 164482 20409623 ~ 20434382 (+)
G142771 NA non-coding downstream 178281 20423422 ~ 20499753 (+)
G142780 NA non-coding downstream 288650 20533791 ~ 20534057 (+)
G142788 NA non-coding downstream 331568 20576709 ~ 20580373 (+)
rnf138 NA other upstream 3627 20202648 ~ 20220149 (+)
G142620 NA other upstream 355484 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1330267 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 1353459 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 3019283 17203222 ~ 17204493 (+)
G142820 NA other downstream 537442 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 1323941 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 1353541 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 1400764 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 1566150 21811291 ~ 21908314 (+)

Expression


Co-expression Network