LOC111194338 (LOC108440942,LOC108268057)


Basic Information

Item Value
gene id LOC111194338
gene name LOC108440942,LOC108268057
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20556766 ~ 20574038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678180.1
gtggaggGGGAGCGGTGAGGTTAGTtaactccagcagcagcagaagaagcacTAAAGCCCCGTGTTTACTGTCTGTCTGAGTCTATAAACCCAGCTTTAACTCCTCACACACGTCTGGTCCAGCAGCAGGAAGCAGAGATGATCATTCGGCAGCTGGTGAGGAGGACCCCCCTCCCTGCTTTAGAATGTGGGACTCAGATTGCGCTGCTGAAAACTATGACTGGAGTAGCGAGACCAAACTCGGACATGGCAGAGTTTCGTGAGGTTTTCTCCAAAGCCAAACACATCGCCATCATCACTGGAGCTGGAGTAAGTGCAGAGAGCGGCCTGCCCACCTTCAGAGCAGCCAGTGGCCACTGGAGGAAGTGGAAGAcccagGATCTGGCAACCGCACAGGCTTTCTCCCGCAACCCGTCCAGAGTTTGGGAGTTCTACCACTACTGGAGGGAGCTGGCTCTGAAAGCCACGCCCAGCGAGGCCCACAGAGCGATAGCCGAGTGTGAGGCGAGGCTCAGTAAGCAGGGCCGGTCCGTGGTGGTCATCACTCAGAACGTGGACGAGCTGCACCGCAGAGCCGGGTCCAAACATGTGCTGGAGGTCCACGGCAGTCTGTTCAGGACCAGGTGTCTGAGCTGTGGAGATGTAGACGCCAGCCACCACAGCCCCATCTGTCCTGCTCTAGAGGGCAAAGGTGATCCAGACCCAAACTGCCGTGATGCTGCTATTCCTGTGAAGAATTTACCACGgtgtgatgaggGGGGATGTGATGGGCTTTTGAGGCCACATGTGATCTGGTTTGGGGAAACGCTGGACTCTCATATCCTCACCAAAGTGGAGAAAGAACTGGATGCCTGTGATCTTTGCCTGCTGGTTGGTACGGCGTCCGTCGTCTTTCCTGCAGCCATGTTTGCCCCTCAGGTTGCGTCCCGGGGCGTTCCAGTGGCCGAGTTTAACATTCGCCCGAGAGCGAACATGTCTCGATTCACGTATCATTTTCAGGGTCCCTGTGCGACCACCCTGCCCGTCGCTCTGGAGCGCCACGAGTCCGAGGTGATCTGAACCAAGCCCCGCTTTTCCACAgtggaaagagaggaagaggagaatcttcatcttcctctttataaaCCAGCCCTGAGGGAGAGCCCTGCTCAattaccagcatttacacacagcGCACAGAAGCACTCAGCGCCGGGAGCGCGGCGGAGCCCAGAGATCCGTGTCTCTGTTATCAGTACTTTCTGCTTTAAATGAGGTTTGTGGAGGATTAAAAGAGGTGGAGTGGACCTGTTATAGGGGTGTTGTTTCAGCCACGTGGGAACCATTTAATGCTCACTAGGAAATTGGGAGAAGTGTGCTGAATCTCATTTTATTAGCGGTGTAATATAATTGATCATGTTGTGCAGTAAAGCCAAAGCGTTCCCTGGAGACCGTG

Function

NR:

description
PREDICTED: NAD-dependent protein deacylase sirtuin-5, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678180.1 True 1435 mRNA 0.55 9 20556766 20574038

Neighbor

gene id symbol gene type direction distance location
mep1b LOC108439312 coding upstream 311625 20223776 ~ 20245141 (+)
ripk1 NA coding upstream 441553 20088296 ~ 20115213 (+)
LOC111194335 NA coding upstream 1125592 19425994 ~ 19431174 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 1437236 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 1569325 18969886 ~ 18987441 (+)
LOC111194337 adcy1 coding downstream 37457 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 141506 20715544 ~ 20774155 (+)
LOC111194340 NA coding downstream 229262 20803300 ~ 20812844 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding downstream 314925 20888963 ~ 21008006 (+)
LOC103043942 LOC108436149 coding downstream 759708 21333746 ~ 21338732 (+)
G142780 NA non-coding upstream 22709 20533791 ~ 20534057 (+)
G142771 NA non-coding upstream 57013 20423422 ~ 20499753 (+)
G142769 phactr1,LOC108239648,LOC107383912 non-coding upstream 122384 20409623 ~ 20434382 (+)
G142765 NA non-coding upstream 142126 20398753 ~ 20414640 (+)
G142726 NA non-coding upstream 416367 20138126 ~ 20140399 (+)
G142788 NA non-coding downstream 2671 20576709 ~ 20580373 (+)
LOC111194339 NA non-coding downstream 25628 20599666 ~ 20604356 (+)
G142796 NA non-coding downstream 84863 20658901 ~ 20663865 (+)
G142814 NA non-coding downstream 127648 20701686 ~ 20708499 (+)
G142823 NA non-coding downstream 225202 20799240 ~ 20799576 (+)
rnf138 NA other upstream 336617 20202648 ~ 20220149 (+)
G142620 NA other upstream 688474 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1663257 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 1686449 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 3352273 17203222 ~ 17204493 (+)
G142820 NA other downstream 208545 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 995044 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 1024644 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 1071867 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 1237253 21811291 ~ 21908314 (+)

Expression


Co-expression Network