LOC111194340


Basic Information

Item Value
gene id LOC111194340
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20803300 ~ 20812844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678181.1
atgcagcCGCACAGTGCATATATAAGAACAGCGCGCGCCGTGAAACCCCAGAAACTCAGCAGATCTTCAAAGCTCCCAGAAGCTCCAATCGCCCTCGAGCTCGGACCCTAAACCCGCGCACTTTTCTCTCTCCGCCTCTCTCTGAGCCATGCGTGTACTCCAGCCCGTGCCCGTGCTCGTGCCCGCCGAGCTCGCCCTCTCCTGCCTCCTCCTTCTACTCGTGCCCTCCGCGCGCTCCTCTCCGGTGGCGCCTCCCCCGCCCCTCGCGCCCATCCGCTGCGCGCCCTGCACGCCCCTGCAGCTCAGCGCGTGCCCCGCCGTGCCCGCACGCTGCCCCGAGGTGCTGCGTGAGCCCGGCTGCGGATGCTGTCTGGCGTGCGCGCTCTCGCTGGGGGATGCGTGCGGCGTGCACACCGCGCCCTGCGGCTCGGGCCTGCGCTGCACCCCGCGCGCCGGGGACCCCCAGCCGCTCCACTCGCTGGTGCGCGGGCAGGGCGCGTGCGCGCGCGCGGAGAtgacacagcagcagcagcagcaggaggaggaggatgaagagcGGGAGGATGAAGAGGCGCTGATGCTGATACACAACACCGTGCCCACCGAGGAGTCCGACCTCCACAGCCTGCACgcgctgctgcagctcagccagcCCACCGACACCACGGCGCGCGACGCCATCCGGGCCAGAGCCAACGCCATCCGCAAGAAGCTCGTGCAGCTGGGTCCGTGCCACACTCAGCTCCACGCTGCTTTAGACACCATCGCCGCCTCCCAGCAGGCTTTAGGCCAGCAGTTCACCTCCTTCTACCTGCCCAACTGCGACAAACACGGCTTCTACAAGGCCAAGCAGTGTGAGACGTCTCTGATGGGTCAGCCCCCTCGCTGCTGGTGTGTGTCGTCCTGGAACGGCCAGAGAATCGCAGGGTCCGGCGACGTGACCGTAGATGACCTCTGCCAGCAGGAGGTCACCCACTGAAGACCACTCTTCTCCTCATCACACTATCACACCCTGCTTAGAAAgcgttttattgtttttgagaCTAAaggcaattttatttatttaattttgggtCTTATGACACCgccacttatttatttaatatgtgtgtttttattctaaGATTTAATTTGGAGTATTTATAGAGTATTTTGCTTACAAGTAGAAGAAACCCCTAATTTCTGctgttattttgtattattattttggttttaaaCAACTCCAGTGCTGAAGAGCGGCACATGCAGGCATGTCTTTTTCTGGAAAATgacttattgtaaaaaaaaaaaaaatattgtaaaaatcaATGCAGTTTGTTGAATTTGTGGATGtagcatattaaaaaaaaacattgcattttGACTAAAA

Function

GO:

id name namespace
GO:0031994 insulin-like growth factor I binding molecular_function
GO:0031995 insulin-like growth factor II binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678181.1 True 1369 mRNA 0.57 3 20803300 20812844

Neighbor

gene id symbol gene type direction distance location
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 29145 20715544 ~ 20774155 (+)
LOC111194337 adcy1 coding upstream 135823 20611495 ~ 20667477 (+)
LOC111194338 LOC108440942,LOC108268057 coding upstream 229262 20556766 ~ 20574038 (+)
mep1b LOC108439312 coding upstream 558159 20223776 ~ 20245141 (+)
ripk1 NA coding upstream 688087 20088296 ~ 20115213 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding downstream 76119 20888963 ~ 21008006 (+)
LOC103043942 LOC108436149 coding downstream 520902 21333746 ~ 21338732 (+)
LOC111194246 LOC108436149,LOC108267579 coding downstream 526736 21339580 ~ 21349632 (+)
penk penk coding downstream 696897 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 717497 21530341 ~ 21562050 (+)
G142823 NA non-coding upstream 3724 20799240 ~ 20799576 (+)
G142814 NA non-coding upstream 94801 20701686 ~ 20708499 (+)
G142796 NA non-coding upstream 139435 20658901 ~ 20663865 (+)
LOC111194339 NA non-coding upstream 198944 20599666 ~ 20604356 (+)
G142788 NA non-coding upstream 222927 20576709 ~ 20580373 (+)
G142833 NA non-coding downstream 28085 20840929 ~ 20841214 (+)
G142834 NA non-coding downstream 36934 20849778 ~ 20850015 (+)
G142925 NA non-coding downstream 60871 20873715 ~ 20873982 (+)
G142948 NA non-coding downstream 300411 21113255 ~ 21113653 (+)
G142951 NA non-coding downstream 332101 21144945 ~ 21148588 (+)
G142820 NA other upstream 13178 20782583 ~ 20790122 (+)
rnf138 NA other upstream 583151 20202648 ~ 20220149 (+)
G142620 NA other upstream 935008 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1909791 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 1932983 18865450 ~ 18870317 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 756238 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 785838 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 833061 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 998447 21811291 ~ 21908314 (+)
G143324 NA other downstream 1722841 22535685 ~ 22610447 (+)

Expression


Co-expression Network