LOC103039837 (nfib)


Basic Information

Item Value
gene id LOC103039837
gene name nfib
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24105335 ~ 24140202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678217.1
TAATTTCCCCATGTCAGGGAGGCAAATAAAAAGCCATAAAAGGCTGTAAGAGCTAAACAAATAAAGCTGAAGGGAATGGAAGTGGGTGATAAATGAAGGTAATGTACGGTAATGTAATcaccgctgctgctgctcttttGAATCACTCCgtctgtgttttgtgttctaATCCAccttctttatttttgtttacagacTCGCAGCAGTCAGGAAGTCCCAGTAACAATGAGCCTGGCAAGAACCCTCCAGTTTACCTGGAGGACAGCTTTGTGAAATCAGGAGTCTTCAGTGTTTCAGAGTTGGTGAGAGTTTCCAGAActCCTATCACGCAGGGGACAGGGGTGAATTTCACAATGGCAGACATGCCCAGTCAGCCATACTACCATGACCTGAACTCAGTGAGCTTACACCGCTCACTCCCCTCTCCTCACGGCAGTAAACGAGCCAAGACGATTCCAGAGGACAGTATGGAGACCAGTCCTACTGGCCCAGACTTCTACTCCTCCCCCAGCTCACCGGTTAGCCGGCCCTGGCATGAGAGAGACCAagCTGAGATGTCCTCTCCCACCATGAAGAAGGCAGAGAAGCCTCTGTTCAGCCCGACGTCCCCTCAGGACTCCTCACCCCGCCTCAGCTCCTTCCCCCAGCATCATCACCTGACCAGTGTTGGCCACAGTGTGATTTCCACAAGAAGTCCTCCCCCTCACTCTCCGCTGCAGTTCTCAGCTCCTGCCATCCTCCCCCCAGCTCCGTCATCCTACTTCTCCCATCCCACTATCCGCTACCCACCCCACCTCAACCCTCCTGACTCCCTCAAGAACTACGTGCAGCCTTATGACCCGTCCAGCCCCCAGAGTAGCCAGCCAAACAGCAGTGGTCAGGTGGTGGGGAAGGTTCCAGGCCACTTCACACCAGTGCTGACCCCGTCTCCCCACCATGGCACAGTCAGAccggtctctctctctatgcctGACACCAAGCCAATCACCACATCCTCAGAGGGTTATTCGGCTCCTGGCACCCCTACCGCTAACCGTTTTGTGGGACTGAGCCCTAGAGACCCTGCCTTCCTCCACCAGCAACAGCTGAGGATTTGTGACTGGCCCGTGAATCAAAACGTCAGGTCTTATGGCTCAGAGGAGGCTTTGGGGATTTCTTGGCAAAGTGGTACCTGGGCGAGCTTAATTCCATTCCAAGTGTCGAACGGGACTCAGATTCTGCCAACAAATGTCCAGAATTACAGCATAAACATCATTGGTGAGCCCCTTCTCCAGGCAGAGACAAGCAACTGACCAAGCCGGGCCGAGCCTAGACTCTGGAGTGACAGGTCCGTGGACAAACCAGCAAGCAGCACTTATACAATCGCCATTGACTTTTGTCCCTCCCACTGAAGGACTTTGACCTAGAACAGAAGAGTGGGCTGGGTCAAAGCTGGCACGAGCCTCTCCATGCCAGTCAGTCATTGTGTGAGGAGGCCCCTCAACTGACATACTGTGAtatttaccataaaaaaaaattagatgcCTTAATGTTTTTGCATGACACGCTAGTCTCTTGTAGTGTTTTCTCTCATTCTTACGTCACAATTTCTAGTCTTGATTTATGAGCAGGTGTAGAAAGAGAGGCACACAAGGGCTGGCTGGCTGGACGTTTTGGGAAAACAGGCTCCAATTCTGACAAACGCATCAAACTAAGCTCAGACGTTTCATAACATAATCATAGGAACGATTTTTAGCAATTCTGATCtttctgttgttattttttatttttttaccctctaaatttatcattttctgtgaTTGAAAGTCACCTTCTGGTATCTGTAATCTTGTCAATCTTAGATTTGTATTTCCTTTAAAGGTAAATATTACCTTAACTTTTTTCAGTGAAAGAAAAAGACCTGTATTAATAGGTTAGAAAAACAACCCCATTCATTTTTTGACATATTCTAGAAAggattttcagaaaatgaaaaaaagaaaatatctcaTATGAGGCAAGtgcaatttaaatgatttttttactgAAGGGAAGCTATCATAGTCTGTCTGCCCTAGGACTCTAAAGGAAAGGGGAGTAAAAGTTTTTACTAAACTTTTAAATCatgaaatacaatttaaaattgCATCCTCGAATATGAAAATGGGGGATAGTTGAGGGTGGAAAGGCGTGATTGACAGTGAACGTTTACCTGAGCAGAACTGAACATGAACAAAACAGCACTTATCTTGAGCCGTACCCAGCACTCGGGTAgctattgtttaatttattttgtgaaaTGGCAAACAGAAACTTAAAAAGGTGAAAAGACACAGATATACCGCGTGTATAAAATGGCTTATTTTGATGTAGTACCCACCAATTTAGTGTGCATTTTCATTTGGGCCATTAGCTTATAAAGCTACTGTTTACAATGTGATATTACAAGAAACATGAGGAACGCAGGCTGGTGAAGTAATTTAAGAGTAAATGTGTGTGCttgcgtgcgtgtgtgcgtgcgtgtgtgtgtgtgttatgttgtAAAATCTGCACTCAGTTAAACACTAACCTGCAGGGTGAGGCTAGGTCTCATGGTGCTTCTTTTATGCCCAGTTTGGTGGATCCCAAGAGTTGCAGTCCCATCAATCCGCAATTGTTCACGGCAGTCCCAATGCCATCGCCTCTCCAatcagatatatttatataactaaTCTTTCCAATAATGTTAATTTGCACGAAGATATATAGTCCACATTACGTGCCTTGCCTTTGAATATAGACATCACTACACTTGTTTTTGCTGCATTTATTAccgttttagaaaaaaaataacatttttatgatAAGAAATATTTTGTACTCTGGATGAAATTGTGACATTGTTGATTTTTAGCTCCATTTACTACTTTATCTCACATTTACAGTGCATATCAAGGCTGTGTATAGTTGCCGTTCTAAAGTTTATAATCAACCAGcattatttttcagtattttggtgttgttttattttttgtttttcatcttCCAGTCATTATTGGGGAGGGAGGGGTCCAGAATTATACAAATTATGCAATACCAAGTTTTGCCTATGTAGGTAGTGCTTTTAGCTATGTCGATTATTAGAAGCTAGTAAGGAGATACAGAtagtgtaaacatttattttgttgatgTTGTCATGGTTAATGTCGTTGTCATTGttgatgttgttgttgttgttgttgttattttcttttttttattgaccaAAGTGGGAACTGCTGTCTATGCAGTGTATGACAAGgtcgtttctttttttcttcctttttttcccttttttttcttttgagtgtACTGAAAGATGGAAAGGTGCTTGTAAGGGTTGTTTTGTTTCGTATTCTCTGTGAGgggattaattatttttctacaCTTTGTAGCATGTCTGCAAAGAATGCACCATTTGGTCTAATACGGCTGCAAAGTCACTGATCTGTCTACTGTGACTAACCAACACTTTCTTTAATCTTCACACCTGGGGTGCTAGCCTGACTCCTGGAAGAAGCTCATTTTCACAGAAGAGAAAGCTTGGCTTGAGAATGACAATCAGCTATGAAATCCGGAGCATCACTTAGATCAATCAGATTTATCTGCAGATTGACCTTTATGCAATGAGGACATTAAGTTTTATTCATGCACTACACATGGTTACCTGTTAATTCTTTCATCAGACACTGATCTGACATCATTTAACATAATGCACaacatctatctatcatatatatTGTCGGTTCTGTCTTGAAAGCTATGAAGAGTATGTCAAGCATTGCTTCTGCATAAGTAGCAATATGCAATTTCAAAGTAGATGCCttacatttttactaaaaaaaaaaaaaagaaaaagtgaaaaaagtgacTTGTTATAAAATGCGTTACAATCACCACGCTGTCCTGCGTGATTAAACTCTCtcacaatcagaaaaaaatgactttgcTATTCTTTATTGTTTTGCTATCTTGGAGATATTCCCAGTTGTAGCCTTATCGAGATGTCAGTCAGGCTCGGGGACACCGTATTAGCTCATTATCTATATTTTCTGTTCTCTTTGTGATAAGCTGTGGACTTCAGAGGAAGAGCCTTATCTGTTCCCCATTTGGTCTGGAGGACCAAGATATCTCACTGCAGATTAAACGTTTAGCACTTATACAGCACATAGGCAATCATCCACCTATAGTGTCCTTTCAATTTAACACTGAAGTCTAAAACTCTGTAACTCAGGCATAATGCTACATGGGGCATTATCAGCATCAGTTGTTAGGTTTGCTTTCAAGACGACTACGACATTATCAGATTTACACTACGTTCCTGCTGTTTGCACTTAAGCCCAACTACCAGCCAATCATGCATCCTTCATCATTAAAACCAGTCCTCAGAACAAGAAACACaaattcaaaaaaatattaaaa
>XM_022678218.1
CCCATGTCAGGGAGGCAAATAAAAAGCCATAAAAGGCTGTAAGAGCTAAACAAATAAAGCTGAAGGGAATGGAAGTGGGTGATAAATGAAGGTAATGTACGGTAATGTAATcaccgctgctgctgctcttttGAATCACTCCgtctgtgttttgtgttctaATCCAccttctttatttttgtttacagacTCGCAGCAGTCAGGAAGTCCCAGTAACAATGAGCCTGGCAAGAACCCTCCAGTTTACCTGGAGGACAGCTTTGTGAAATCAGGAGTCTTCAGTGTTTCAGAGTTGGTGAGAGTTTCCAGAActCCTATCACGCAGGGGACAGGGGTGAATTTCACAATGGCAGACATGCCCAGTCAGCCATACTACCATGACCTGAACTCAGTGAGCTTACACCGCTCACTCCCCTCTCCTCACGGCAGTAAACGAGCCAAGACGATTCCAGAGGACAGTATGGAGACCAGTCCTACTGGCCCAGACTTCTACTCCTCCCCCAGCTCACCGGTTAGCCGGCCCTGGCATGAGAGAGACCAagCTGAGATGTCCTCTCCCACCATGAAGAAGGCAGAGAAGCCTCTGTTCAGCCCGACGTCCCCTCAGGACTCCTCACCCCGCCTCAGCTCCTTCCCCCAGCATCATCACCTGACCAGTGTTGGCCACAGTGTGATTTCCACAAGAAGTCCTCCCCCTCACTCTCCGCTGCAGTTCTCAGCTCCTGCCATCCTCCCCCCAGCTCCGTCATCCTACTTCTCCCATCCCACTATCCGCTACCCACCCCACCTCAACCCTCCTGACTCCCTCAAGAACTACGTGCAGCCTTATGACCCGTCCAGCCCCCAGAGTAGCCAGCCAAACAGCAGTGGTCAGGTGGTGGGGAAGGTTCCAGGCCACTTCACACCAGTGCTGACCCCGTCTCCCCACCATGGCACAGTCAGAccggtctctctctctatgcctGACACCAAGCCAATCACCACATCCTCAGAGGGTTATTCGGCTCCTGGCACCCCTACCGCTAACCGTTTTGTGGGACTGAGCCCTAGAGACCCTGCCTTCCTCCACCAGCAACAGTGGTACCTGGGCGAGCTTAATTCCATTCCAAGTGTCGAACGGGACTCAGATTCTGCCAACAAATGTCCAGAATTACAGCATAAACATCATTGGTGAGCCCCTTCTCCAGGCAGAGACAAGCAACTGACCAAGCCGGGCCGAGCCTAGACTCTGGAGTGACAGGTCCGTGGACAAACCAGCAAGCAGCACTTATACAATCGCCATTGACTTTTGTCCCTCCCACTGAAGGACTTTGACCTAGAACAGAAGAGTGGGCTGGGTCAAAGCTGGCACGAGCCTCTCCATGCCAGTCAGTCATTGTGTGAGGAGGCCCCTCAACTGACATACTGTGAtatttaccataaaaaaaaattagatgcCTTAATGTTTTTGCATGACACGCTAGTCTCTTGTAGTGTTTTCTCTCATTCTTACGTCACAATTTCTAGTCTTGATTTATGAGCAGGTGTAGAAAGAGAGGCACACAAGGGCTGGCTGGCTGGACGTTTTGGGAAAACAGGCTCCAATTCTGACAAACGCATCAAACTAAGCTCAGACGTTTCATAACATAATCATAGGAACGATTTTTAGCAATTCTGATCtttctgttgttattttttatttttttaccctctaaatttatcattttctgtgaTTGAAAGTCACCTTCTGGTATCTGTAATCTTGTCAATCTTAGATTTGTATTTCCTTTAAAGGTAAATATTACCTTAACTTTTTTCAGTGAAAGAAAAAGACCTGTATTAATAGGTTAGAAAAACAACCCCATTCATTTTTTGACATATTCTAGAAAggattttcagaaaatgaaaaaaagaaaatatctcaTATGAGGCAAGtgcaatttaaatgatttttttactgAAGGGAAGCTATCATAGTCTGTCTGCCCTAGGACTCTAAAGGAAAGGGGAGTAAAAGTTTTTACTAAACTTTTAAATCatgaaatacaatttaaaattgCATCCTCGAATATGAAAATGGGGGATAGTTGAGGGTGGAAAGGCGTGATTGACAGTGAACGTTTACCTGAGCAGAACTGAACATGAACAAAACAGCACTTATCTTGAGCCGTACCCAGCACTCGGGTAgctattgtttaatttattttgtgaaaTGGCAAACAGAAACTTAAAAAGGTGAAAAGACACAGATATACCGCGTGTATAAAATGGCTTATTTTGATGTAGTACCCACCAATTTAGTGTGCATTTTCATTTGGGCCATTAGCTTATAAAGCTACTGTTTACAATGTGATATTACAAGAAACATGAGGAACGCAGGCTGGTGAAGTAATTTAAGAGTAAATGTGTGTGCttgcgtgcgtgtgtgcgtgcgtgtgtgtgtgtgttatgttgtAAAATCTGCACTCAGTTAAACACTAACCTGCAGGGTGAGGCTAGGTCTCATGGTGCTTCTTTTATGCCCAGTTTGGTGGATCCCAAGAGTTGCAGTCCCATCAATCCGCAATTGTTCACGGCAGTCCCAATGCCATCGCCTCTCCAatcagatatatttatataactaaTCTTTCCAATAATGTTAATTTGCACGAAGATATATAGTCCACATTACGTGCCTTGCCTTTGAATATAGACATCACTACACTTGTTTTTGCTGCATTTATTAccgttttagaaaaaaaataacatttttatgatAAGAAATATTTTGTACTCTGGATGAAATTGTGACATTGTTGATTTTTAGCTCCATTTACTACTTTATCTCACATTTACAGTGCATATCAAGGCTGTGTATAGTTGCCGTTCTAAAGTTTATAATCAACCAGcattatttttcagtattttggtgttgttttattttttgtttttcatcttCCAGTCATTATTGGGGAGGGAGGGGTCCAGAATTATACAAATTATGCAATACCAAGTTTTGCCTATGTAGGTAGTGCTTTTAGCTATGTCGATTATTAGAAGCTAGTAAGGAGATACAGAtagtgtaaacatttattttgttgatgTTGTCATGGTTAATGTCGTTGTCATTGttgatgttgttgttgttgttgttgttattttcttttttttattgaccaAAGTGGGAACTGCTGTCTATGCAGTGTATGACAAGgtcgtttctttttttcttcctttttttcccttttttttcttttgagtgtACTGAAAGATGGAAAGGTGCTTGTAAGGGTTGTTTTGTTTCGTATTCTCTGTGAGgggattaattatttttctacaCTTTGTAGCATGTCTGCAAAGAATGCACCATTTGGTCTAATACGGCTGCAAAGTCACTGATCTGTCTACTGTGACTAACCAACACTTTCTTTAATCTTCACACCTGGGGTGCTAGCCTGACTCCTGGAAGAAGCTCATTTTCACAGAAGAGAAAGCTTGGCTTGAGAATGACAATCAGCTATGAAATCCGGAGCATCACTTAGATCAATCAGATTTATCTGCAGATTGACCTTTATGCAATGAGGACATTAAGTTTTATTCATGCACTACACATGGTTACCTGTTAATTCTTTCATCAGACACTGATCTGACATCATTTAACATAATGCACaacatctatctatcatatatatTGTCGGTTCTGTCTTGAAAGCTATGAAGAGTATGTCAAGCATTGCTTCTGCATAAGTAGCAATATGCAATTTCAAAGTAGATGCCttacatttttactaaaaaaaaaaaaaagaaaaagtgaaaaaagtgacTTGTTATAAAATGCGTTACAATCACCACGCTGTCCTGCGTGATTAAACTCTCtcacaatcagaaaaaaatgactttgcTATTCTTTATTGTTTTGCTATCTTGGAGATATTCCCAGTTGTAGCCTTATCGAGATGTCAGTCAGGCTCGGGGACACCGTATTAGCTCATTATCTATATTTTCTGTTCTCTTTGTGATAAGCTGTGGACTTCAGAGGAAGAGCCTTATCTGTTCCCCATTTGGTCTGGAGGACCAAGATATCTCACTGCAGATTAAACGTTTAGCACTTATACAGCACATAGGCAATCATCCACCTATAGTGTCCTTTCAATTTAACACTGAAGTCTAAAACTCTGTAACTCAGGCATAATGCTACATGGGGCATTATCAGCATCAGTTGTTAGGTTTGCTTTCAAGACGACTACGACATTATCAGATTTACACTACGTTCCTGCTGTTTGCACTTAAGCCCAACTACCAGCCAATCATGCATCCTTCATCATTAAAACCAGTCCTCAGAACAAGAAACACaaattcaaaaaaatattaaaa

Function

symbol description
nfib Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and transcription regulator inhibitor activity. Involved in brain development; negative regulation of DNA binding activity; and regulation of transcription by RNA polymerase II. Located in fibrillar center and nucleoplasm.

NR:

description
PREDICTED: nuclear factor 1 B-type isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678217.1 True 4419 mRNA 0.42 10 24105335 24140202
XM_022678218.1 False 4332 mRNA 0.42 9 24105342 24140202

Neighbor

gene id symbol gene type direction distance location
arl5b arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092 coding upstream 133763 23946103 ~ 23971572 (+)
LOC103035300 cacnb2,LOC102289395 coding upstream 199831 23780252 ~ 23905504 (+)
LOC103024717 LOC108436153,LOC108267195,LOC107730122,LOC559800,LOC107698664,LOC107559837 coding upstream 370407 23710508 ~ 23734928 (+)
LOC103024399 pde5a,pde5ab coding upstream 441288 23572803 ~ 23664047 (+)
LOC103023765 NA coding upstream 663245 23435594 ~ 23442090 (+)
LOC111194343 NA coding downstream 475909 24616111 ~ 24648725 (+)
ddit4l ddit4l coding downstream 517211 24657413 ~ 24661107 (+)
LOC103038819 H2AFZ,h2afvb,LOC103038819,LOC105895420,LOC102200939,LOC107706756 coding downstream 546063 24686265 ~ 24689586 (+)
gps2 gps2,LOC106608669 coding downstream 552900 24693102 ~ 24704428 (+)
LOC103036193 ybx2 coding downstream 573527 24713729 ~ 24733773 (+)
G143928 NA non-coding upstream 33439 24066946 ~ 24071896 (+)
G143919 NA non-coding upstream 58893 24045265 ~ 24046442 (+)
G143867 NA non-coding upstream 84825 23962181 ~ 24020510 (+)
G143841 NA non-coding upstream 312157 23792939 ~ 23793178 (+)
G143793 LOC107571931 non-coding upstream 433464 23670856 ~ 23671871 (+)
G143964 NA non-coding downstream 49432 24189634 ~ 24189882 (+)
G143973 NA non-coding downstream 141832 24282034 ~ 24283150 (+)
G144000 NA non-coding downstream 287860 24428062 ~ 24428498 (+)
G144014 NA non-coding downstream 549593 24689795 ~ 24690175 (+)
G144038 NA non-coding downstream 675662 24815864 ~ 24816084 (+)
G143836 NA other upstream 189253 23827948 ~ 23916082 (+)
LOC111194174 NA other upstream 698441 23403688 ~ 23406894 (+)
LOC111194251 NA other upstream 710095 23385168 ~ 23395240 (+)
G143324 NA other upstream 1494888 22535685 ~ 22610447 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 2197021 21811291 ~ 21908314 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 296177 24436379 ~ 24602402 (+)
G144017 NA other downstream 566881 24707083 ~ 24711533 (+)
LOC111188189 NA other downstream 716570 24856772 ~ 24876737 (+)
LOC111194253 NA other downstream 752790 24892992 ~ 24894553 (+)
G144146 men1,LOC107660721 other downstream 858571 24998773 ~ 25004171 (+)

Expression


Co-expression Network