focad (focad,LOC101469292,LOC104964325)


Basic Information

Item Value
gene id focad
gene name focad,LOC101469292,LOC104964325
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 26935083 ~ 27035079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678301.1
GTGTCTCGGAGTTGCTAATGTGAGCTGGAGGAGCGGAAAGTTTACAGAGCTGTATGGAGAAACTCCAGTGATCTGAAGAGATGAATGAAACTCTAAAGAAGATGTTGCAGTTCCCCAGCTCGCTCATTCAAGCACAGGCTGTGAGGAGTCTGGTTACCGCAGTGCTGAAGGAGAAGGGCCACAATGAGAAGATATCAGAGTCCACTACTCAGGGCGCTGCTCTGGAGGCTCTGTGGGAGCAGTGCAGCAGTGAGAGCGGGGTGGTGCGCTCAGCATGCTGTGATGCGCTGGTGCTGCTGGTAGAACAGGGGCATGCTGACCTGCAGTATGTTCTCAACAGCATCCTCAACCTACTGCCTTCTGCCAGGAGTGTACAGGGGCTGATTAAGGTAGTTGGGAGGCTATTGCAGATCCAAGCAAGTcaaagagacaaaacaacaccCTTTACATGTCCGTACTCCATCAGGAGCAGCCCTCACCCGTACATCACGGTTCTGGAGAATCGTCCTGATTGCTGGCCCGCTCTGCTGCAGGAGATTGATGACTTCATCCAACTCGCTGCTGACAAAGATGAGCCGTTACATATTTCCATGCTGGCTCCGTTCCTGCGTTACCTTTACTGTGAGCCTCAGAGACTGGCGGAGAACGCCCTGCTCAGACACAGCCTGCTCAGAGTCCTGCTGCAGCCCAGAGAGGGTCAGGACTCCTCCTGCACTCGGGTCACCAACGAGATCCTGCGCTGCCTCGTCCAGCTCTTCCCTCATGTACTGgtGGACAGTGTTACGGCTGTGGTGGAGCTGAGCTCGTTGGCTGAATCTCTGATTACTGCGCTGCTCGGGGAGCCGGAGTGCTGGAGGGCTGAGTTAGCTCAGCTGGCGCTGCAGCTGGTGTGTGCCTGTCAGCTCAGCCTGCAGCTGGGAGGAGAGCTCAGGTCCCTCCTGCACACCCTGCACCAGATCCTGCCCGTCTGCAGAGAGGATCTCCCGTCTGAGCAAGTGATCATGGGGATCTCCCTGCTCCTCCTCAGAGCGTCGGCCTCGCAGCAGAGCGCCCTCCTGGAGCTCGCTGTGAAGATTGTCCCACCTGAGGTAAGGCCTCCCTGGGGTGCCTCGTTGTTAGTAATGCCCCTGCTGCAGGTTCTTTCCTGCTCCAACCTAATGGAGGCGCTCTCAGACCCACAAACACAGAACAAGAACCGAGAATTAGCTAATTCTCTGCTGGAGACTGTCCAGAAGGAACCGTGTTGTCCAGTACAGAGCAGCACACAGCTGACTCTTCCTCTCAGTACATGGTACAGCGAGCTACGGGTGGCCACCAGCGTTCTAAACCAGATCTCTGAAGAACCCATAGCCATAGTGGAGTGGCTCTACTCTGTTCAGTCCACTCTTCCTCTGTGTGATCACGTCCCAGACGCTCTACCGCTCCTTATCACTCACCTGATCATCAGCAGTGAGGGGGACCTCTGCAGGCTGGCACTGGACACCGCAGCTGCCATAGCTGAGGCAGATCCTGCACAGgtcccCTGTCTTCTCCCGGTTGTGATGCTGAAGCTGGGCCAGGTGTCTGACCCTGCTTTGTCTCATGCTCTGCTCTCCACCTTACCAAAACTGGGCACACACAAGTTTTGTATACCGCAGGTTCTGCATGTACTGCAGGCTCTGGCCAGCTCCCCCAAACTGAGGGCTGTGGCTCTGCGTCTTCTGACCTCCCTGTGGCAGAAACAGGACCGTGTGTATCCAGACCTGCAGAAGCTGATGGCGGTGTTGGAGAAGTCCTCAGTGGTGGTGGGAAAGGAAGCTCAGTGGGAGCAGATTCTGGCCAGAGCTGCCTCTGTACGGGACATCTGCAGAGAGAGGCCTTACCAGCACGGAGGAGACATGCTGGCAGCCATTACAGACATGCTGACTCAGTGCTCGAGGAAGGATCACGCCACTCCAGCAGCGCTGGCCCTGCAGGGTCTTCAGGAGCTCTGCAGAGCTGAGGTGGTTGATATAGACTCCACATGGCGGGCTCTCTCTCCCAAACTGAGCTGTGAAACGAGACCTCTGGTGTTAAAGGCCACCGCTGAGCTCCTTTCACTCGTGCCTTCACTGCACGTCAAAACAGAACAGTATGAGAGTTTTAAAAGTGAAGTGGTCAGTATTCTGTGGAGTCACGCTCTGAGTCAGGATGCTGATGTGGCTAGCAGTGGTTACAGAGCATTGTCTGAATTCCCAGAATCCTCTCACTCGGTCATGCATCTGCCTGAGCAAGCCAGACCAGAGATGAAGCAGCCTGAAGACGAGGATGACgaggagaaagagaataagaagGAGGAAGATCTAACTGTTCCGGGGACTTCATACATAAAACTCGTTGCTCTTACTCCGCGGCCAGTTTCAGCAGCACTTGAGACCTTCCTGACAGCTCTTGTAAGACAAGAGATGAGTCAGATGCCCCGTGGAGTGTACCACTCAGCCCTGAGAGGGGCGAACCTGCGCTCAGACCAGGGGAAAACTGTTGCTGGAATCCCTGCATTCATGCTGAAATCTTATGAAAAGAACAAGCAGCCAGGTCTGAAACCTGGACTAGCAGCTGGTCTGCTGTTATGTTATGACCTCCCTGTCCAGACTGACCGAGACGGACGGCCGATTAGCCGCTTCATGGTCAGCAGAGGGCGGAGCTTCCAGCAGACCTTAACCAGCCTCATCCATGAGGTGAACATCCAGCCTTCAGAGTGGCATCGCTCCCTCCTTCTTCCTCAGGCCTGGCGCGGCTTCATGAGCAGAACATTCCATGCTGTGCTGCAGGGTCGGAAGGCAGAGCTGGAGATGTTGCAGAAGCAGGGAAAAGAGAGTCCAGAGGAGCTTCAGTATAAACAGCACTGTGCCTggctctgGGTCAGAGACCAGCTGACTGATGTGGTGAAGTCTGCAGCCAAGGACAGTCCGGTGGTGCAGGGGAACTGTATTCTGGCTCTGAGTGGTCTGGCTGTGGTCCTGAGCCGATATGAAAGTAGCCTGCCTGCACAGAGTGATGGAGCAGTTGAGGTGGGGCCAGAGATCTTACCCACTACCCATTGGCTGTCCATGGTGATTGACACTCTCCTAAGCATTGTGAGCAGCAGCAGTCGACCCAAAGGGCAAGTCTTCCCCTGGTTCGTCCATCGTTCCTATTCAGGTGAAAACACAGCCAGTGGGATTGCTCGCTCCTGTGCTGCACTGGGTTTGGCGTTGCTGGTTCCAGTCCTGGTCACGTCCCACAGAGACGCAGTGCCCACAATACTGTCCACTCTGAGCTCAGGCCTGCCTGGAGCGCCCACTGCTGACGAGACTCAGGCGCTGCAGTTCCACAGCGGCCTGGCCTTGGGCATGCTGCTGGCCTGGCTGAACGAGGAGAGGGTCAGTGACATCGCTGGGCAGTCCATGTGGGAGCTGCTGCTGAACACTTTGGAGCCTCTGGAGGCGTGCTGCTTCAACACCCAGCTGGAGTACAAtgctgggTGTGTGTTGGCTGTAGGGCTGGTGCTGAGCTCTCTCTGCAGCAGTAGTGAGGTTGAGCAGCGAGCTCGTGTGGCTCTCTCTCTGGACAGGCTGCTCCAGAGTCTGCaggacagcagcagctgtgggCTGGGGCGCATGCAGCAGGAGGTTCTGGCGTACTCTGTGGCGTGTGTAGGAGTATCTGCGTTTAGTTCTGGAGTTGTTGATGCCAGTAAAGCCGAGGAGGTGATGAACGTCTTGCGCTCCGTGACTGAGGAGAGCCAACAGACTCCAGGCTTTGCCCTGGCTCTGGGTCTCACTGTGCACGGACTGTCCTCCTGTGGTCACGGTAAAGCTGAAGACATCCACCCTCGCCTGCTGGCTGCATGGACCAAGATCTTACTGGCAGAGGGCTGTCCCACCATGCAGAGACTGGCGGCTCTGAACGGACTAATCGCTCTGGTGGGATCTGAAACTGGTCTCCTTCAGCtgaagagtgagacagagcagtCCTCCCAGCAGCAGGCCAGACTGAACGAGGTTATAAGATCCATTACACAGATTATCTCTTTCTCAGGAGCAATAGGTCTTCAGTCTAACGGAGCGTGTCTGGTGGGCCACCTGCATTTAGCCCACATGTCCAGCAGCCACAGCAGAACTGCAGtgCCTCAAGACTTCAGCTATCTCCCAGAAAGGAGCCTCATCAGAGCTTCAGTTGAGTACATCACTGAAGCAGGAAGGAAAGGGCCGGAGTTCTTTCCTCCTGATGGAATAAAGGTGGTTTTGGCTCCACTGGCCACAGTGGGAGATAATTTCCAGTATCCACCCGTCAACTGGAACGCCATTCTCTCACCCATGATGAGACTCAACTTTGGTGAGGAGGTGCAGCATCACTGTCTGGAGTTGGCAGCCAATCAGGCACAGTCTTCCCCCAGTGCTGCACTGTTCCTGGGCGTGTGGCTCGCTCCACCTCTCGTCCACAGCCTGAGTCTTCGTACGAGAGCACTTCTGTACGAGTGTCTGTGTAGCTGGATGAAGCACGTGGCGGAGGATAAGCTGCAGGTGTATGTGGAGAGTCTGGCCGTACAGCAGTTTAATCCAGACACCCGCGCTCAGCGTCATCCCCTCTGCCTCGCCATCCTGCAGGGCCTGGCTAAGGCCATGTCCCTCCCCAACCCCGCCCAGAACTGCTGGAGTTCCCTGTGCACCACCACAGAGAAGATCTACAACCTTTTACCAGATCATATACAGcccaGTGAAGTGGAGCTCTATGAAGGAATCTGTTCCTGCTTGTCAGAAATGAGCGACACAGAGATTGACAGGATTGTCAAAGTCACTGAGGCCAATGTGGAGAAGACCACCTTCATTCTGTCTTACCTCAGTTCCAAGGGCAGGATCCCACTCCTGGGTCTCAATGATATCATCAGCACCGTCCTGCAGAAGGGGAAGACTGAGCGAATCAGTTGGCTTTTCCTTCAGTGCCTCTACCAATCACGTTTGGCCTCCAGTCCTAACACAGGTGTGTCTAAAAGAATGGAGTGGCTGCTGGAGTTAATGGGACATATCAGGAAAGTGACGTATGGAGCATCAGTGAAATGTAACAGAGTAAGAGAGGGAACTGATTTCCTGCTGGAAGTGTTTGCTGCTGCTGTGGTGTCCTGGGCCAATCACTCCACGCCCGTCATCGTTGGCGTCCGAGCTCAGTGGTTTCCATGGAGACAGTTTTCAGCGGAGTACCCAGACGTGCCCCGTGGCCTGTATGTGAACAGCGTTAGCACTGATGAGTCGGTTAAACAGTGTGTGCTGGCCGTTCCTTACGCTCTGAAGCTTCTGCTGGATAAAGAGCCGTGGAAGTCTCAGTCCCAGAAGTTCATTGATTGGCTCTTCAGCATAACGGAAGCTCCTGAGGAAGTTTTATCACCCACAGCGATCTCTACAGCCAGAGCGGCTTTACTGGCTCTGAAATCCAACCCAGAGTTCAAGAAGAAGACCGTCTGGACCAGAGCATACGGCTGGTGATGCACTCAGTCGTTGCTCGCATTGCTTTGCttaataaaacctttatttttgttacaatgTGCGTTGTGGGCTTGAACAGACCCTTCGAAAGTAGTTTTTCAAAGATTGTAAAGAAGAAATGTATTGTACATCATCATCACTTCAGTCATACTAATACCACAGCCCTTCATTGTCACTGTGAAACACACAGTCTTTTCAGAAATTACCTGTTACATAAGATTAAAAGTATTATCAGATGCTAATGACATGTTTACACCACAGAACCATAGATAAAGATCCAGAAAGTATGTGGTTATAGTGTGTTTAAGCACTTaatgcagcaaaacagcaaCATTTCCTTGCAGATCAGTTTGATAAAACCTTTAATCTGTTAATCTGTTGCATGGAAAGGTACAATAGAAAATCtctttacattaacatttttaaaatgtttacattttacatgtgACAAACTCCTCAAGTCTTAATGGTCATTAAAAAGTGAATGATCATGAGTACCAAAGTGCA

Function

symbol description
focad Orthologous to human FOCAD (focadhesin).

NR:

description
focadhesin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678301.1 True 5987 mRNA 0.53 44 26935083 27035079

Neighbor

gene id symbol gene type direction distance location
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding upstream 327892 26602015 ~ 26607191 (+)
etnppl etnppl coding upstream 467263 26448792 ~ 26467820 (+)
col25a1 col25a1,LOC102793499 coding upstream 490105 26116456 ~ 26444978 (+)
saxo1 NA coding upstream 1130698 25801919 ~ 25804385 (+)
LOC103042207 NA coding upstream 1258711 25673233 ~ 25676372 (+)
ndufs2 ndufs2 coding downstream 65745 27100824 ~ 27115844 (+)
LOC111194356 NA coding downstream 213272 27248351 ~ 27251123 (+)
LOC111194351 NA coding downstream 266787 27301866 ~ 27305675 (+)
adgra3 adgra3,LOC107691845 coding downstream 995678 28030757 ~ 28084025 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding downstream 1264417 28299496 ~ 28368962 (+)
G144617 NA non-coding upstream 117756 26817035 ~ 26817327 (+)
G144611 NA non-coding upstream 133062 26798916 ~ 26802021 (+)
G144608 trmt10a non-coding upstream 149319 26783243 ~ 26785764 (+)
G144573 NA non-coding upstream 213926 26720432 ~ 26721157 (+)
G144553 NA non-coding upstream 326399 26608211 ~ 26608684 (+)
G144642 NA non-coding downstream 48251 27083330 ~ 27285363 (+)
LOC111194210 NA non-coding downstream 217279 27252358 ~ 27255652 (+)
G144686 NA non-coding downstream 227171 27262250 ~ 27263283 (+)
G144684 NA non-coding downstream 262366 27297445 ~ 27300088 (+)
LOC111194352 NA non-coding downstream 400734 27435813 ~ 27438301 (+)
G144613 NA other upstream 122956 26807716 ~ 26812127 (+)
G144584 NA other upstream 180641 26750835 ~ 26754442 (+)
G144372 NA other upstream 1146241 25786737 ~ 25788842 (+)
G144333 NA other upstream 1280833 25653006 ~ 25654250 (+)
G144290 NA other upstream 1460389 25472123 ~ 25474694 (+)
G144671 NA other downstream 171663 27206742 ~ 27208591 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 1590965 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 2120646 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 2393946 29429025 ~ 29432026 (+)
G145438 NA other downstream 3143125 30178204 ~ 30178724 (+)

Expression


Co-expression Network