LOC111194351


Basic Information

Item Value
gene id LOC111194351
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 27301866 ~ 27305675 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678314.1
attattattagtagtagtagtagtagcagtagtagtagtagtattattacaGTAAGTGAGGAGAGTTTAATGTAGTTATGTTAGTgatcacacatttttaaaataatatatcaatTATCTGATTGCTTCCTTTTTCCTCTGTATCTGTTCTTTTCTCTTCACTGATTGGATTACAATGTTGCACTGTCTGCATTACCAGccagtgctggatgttaaactCATGTCATGCTATCGTGGAGCTAacattatgtatatttatttattattacatatttatatatcattattattactacattattGTGCTAACATTGGGCTAGTGTTATTCTAGCAGTATGCTAACATttcaaatttaaacaaaatgtactGTGCAAGTCACCTAGGATACGGTGGTGACATCaccaagccactgtatataggGACGTGTGTCTCTCAGTATTCATCAGAAGGTCAGTGTATACCTACTGCACTGGACACCTGAGCCTTTTCTCCATATAAAGATGGATTTTCGCAAGAACGTGGAGCCCTTTTTTCCACCGCTGCCGCCCTCTGGACCACGTCCCATCAGGCCCAAGAGTCGCAGGAGTCTGAGGGTGCTGAAACCGGCCTGGCTGGAGGACTCATTCACATATGAAGAGTTCATTTCCAGACCATTTCCTCAGCACCCCGCTCCTCCACCTGTACCTCTGCCTGTCGCTACCCAAACGATTGTGGTGAATAAGGTGCCGGCCTTCTATTCACCAGGTAGCAGGATTCCAATCCTGGACAGGCGGAGGAAGCAGAGGCCAATCCAAGCTGTGGAGCAGCCTACAATCAACATGGCTGCCCACAGCATCCAGGACAAACCTGCACAGGTGGAGAGAGCTCGCAGGAAGCCCAAACACATCAGGTCAGCTCCTCAGGTTGTTGAGAGAGGTCAGGGAGTGGAGCAGCCACCGGTGCTACCAGCCCTGACCCGGGAGGAGCCCCTCAGCAGGCCTGGGGAAGCTCTCGGCCAGGCGTTGTGCTTGCTGCAGGACGAGGAATGGGAAAGAAAAACCGAGGGACTGCGGCTTGTGCGAGCTCTGGCTGAACACCACGCTGATTTGGTGCTGCCAGAGCTCCACAGCATCAGCACAGCCGTCATTGAGGAGataaaaaaccTCAGGACCATAGTCTCTCGGGATGCCATTTATACCATGGCCCACCTGTTCCATCACCTGCAGCATCATATGGACAGCGAGGTCGAGGGTGCTGCTCGCGCCCTCCTTCATAAGGCTGGGGAGGCCAGCCTGTTTATTAAGGAGGGTGTGGAGCTAGCCCTCAGCATGATGGTGCACTCCTGTTCGCCTGGCCGAGTCCTGCGTGGGCTGCTGGCCGGTGGATTcagACACAGAAACCCTGCCAGCAGGGCAGCCACTGCAGTTTGCCTAAATAGGCTAGTGCATGTGATGCGGGCATCCCGTGTGCTGAATGGCAGGACGTTTACCAGCAAAATCCTTCCTGCCATCAGCACACTGGCGTTCGACGCAGCCCAGGAAGTGAGGACTCCTGCCCGAGCCGCCTTACGTTTTTTGGGCGGGCACAGAGAGGCTGCGGCAGCGGTGGAAAAAATTTGTTTCCATCAGAGATCAGGCCTCAGTCAAACAactacttttaaattaattaaatcaaattaatcacTTGTACAGTTTTTGTATAGAGTTGGGATGTATTCGGTGTTCAGCTGTTCAGAGTGGGGTTTGGTGTCGAAATCTCTGTTCCAGAGAAGCTTACAGAGTTAGAGCtgttcacagtggtggtgaCAGGAACCACATCTGAAGAGGTGGTCAAGGCAGCGACTCCACTTTCTTGCCAGAGGTGGGGTTGCTGCTTGGTGGGAAACACACCGGCCCTGTGGCATCAGGGCTTCCCAGTCAACCAGCTGGGAATGTCCTGCCCCAAAACAAGCCCGGCAAAGCTTGTGAGGGGTTCGCCCAGGGCCGGCCGGCGTCCCCCAGCCACTCTTTTAGAGGCAGTCCACCCTTCAGACATATGGGTCCTGTCTCCATCACTGTGACCAGTTCAGACTCTGTCAGCCTCTCTGGAACAGAGAACACCTGAACACCGAATACATCTCAacaatttgtatttttaccattgcaaaataaaaatcataaaaaaaatcattgtctcTGTCATTATTCAAATAAGTAGAAActagtcagacagacagatagacagtaTAGGTCTGTAGGGATGTATAAATAACAACCATATGCATagactagtgctgggcgatgtGAGGAAAATCATTCATCACGATATGGAAGTTTTTATACCACATTTATaccatataaataaattataaataaacaacactacaacacaGTGACACACAGAGTGAATGAACGTacccaaaacaaactaaaataaacatagcAATGACCCAGTGGGACTCTACTCTTTTTACTAAAGTGTCTATAGGGTccttttttgcttgttttaaatgtgataaAATAATCAGTGTTAGAAACACTTAGATTTGTATTGCTGGTGCCGAACCCTTAAAAAATTGTTGTATTAATcccaacaatattctgtgattaaatcatggataaaatcataattaatttttttaaatgctagtGCTTGAACTGAAATGCACAAGCCTGTAATAAAAACTTCCTTATATAACATATGTCTATTATTAGTATTGTAGTTACTGTACAAATATGTAATgataaacaaactaataaatcaactcttaaacttttaaacactATTAGTGTATGTACTATGAATGAATTTCCAGAAGAACCTAACATTTCTAAAAGTTTGGTATGAGCATCAGCAGTtaggaatcttttttttttttttttttaatgacgtATTGAAACAGAGACTCACATCACATATTACACCATAAATGCTACAACTGCCTCAGTGCATTTCTTTTGCTGTAGTATCATAACGGGGAGGTGAGCAGCATGTCTATACTTGATACGAATTGTGTGGAGGCTGTAAGAATTCTTGGAAGATCAACTGCCAATCCATGAGAAACCACAGAGTTTCACAACAGACCTGCATGGTTGCAAAATTCAGGCATAGTTTACCTTCCTTTTTCAcctgacaaaaaaataattgagagtgaaagaaagaccaaaaaaaaaaaaacctaaaaatgcCTGAGGTGCTTCCTAAAGTATATCCAAATGGTAactataaaaact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678314.1 True 3191 mRNA 0.44 6 27301866 27305675

Neighbor

gene id symbol gene type direction distance location
LOC111194356 NA coding upstream 50743 27248351 ~ 27251123 (+)
ndufs2 ndufs2 coding upstream 186022 27100824 ~ 27115844 (+)
focad focad,LOC101469292,LOC104964325 coding upstream 266787 26935083 ~ 27035079 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding upstream 694675 26602015 ~ 26607191 (+)
etnppl etnppl coding upstream 834046 26448792 ~ 26467820 (+)
adgra3 adgra3,LOC107691845 coding downstream 725082 28030757 ~ 28084025 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding downstream 993821 28299496 ~ 28368962 (+)
LOC103035875 LOC108437090 coding downstream 1105638 28411313 ~ 28445089 (+)
LOC103035569 NA coding downstream 1152229 28457904 ~ 28475027 (+)
LOC103035264 LOC108437087 coding downstream 1190965 28496640 ~ 28564802 (+)
G144684 NA non-coding upstream 1778 27297445 ~ 27300088 (+)
G144642 NA non-coding upstream 16503 27083330 ~ 27285363 (+)
G144686 NA non-coding upstream 38583 27262250 ~ 27263283 (+)
LOC111194210 NA non-coding upstream 46214 27252358 ~ 27255652 (+)
G144617 NA non-coding upstream 484539 26817035 ~ 26817327 (+)
LOC111194352 NA non-coding downstream 130138 27435813 ~ 27438301 (+)
G144782 NA non-coding downstream 131401 27437076 ~ 27439508 (+)
LOC111194353 NA non-coding downstream 132731 27438406 ~ 27440052 (+)
G144833 NA non-coding downstream 349508 27655183 ~ 27657850 (+)
G144845 NA non-coding downstream 445563 27751238 ~ 27751444 (+)
G144671 NA other upstream 93275 27206742 ~ 27208591 (+)
G144613 NA other upstream 489739 26807716 ~ 26812127 (+)
G144584 NA other upstream 547424 26750835 ~ 26754442 (+)
G144372 NA other upstream 1513024 25786737 ~ 25788842 (+)
G144333 NA other upstream 1647616 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 1320369 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 1850050 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 2123350 29429025 ~ 29432026 (+)
G145438 NA other downstream 2872529 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 3023783 30329458 ~ 30331665 (+)

Expression


Co-expression Network