LOC103045778 (kcnip4,LOC100711851,LOC102215477)


Basic Information

Item Value
gene id LOC103045778
gene name kcnip4,LOC100711851,LOC102215477
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28299496 ~ 28368962 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678320.1
CGTTTCCTCCTGCTTGTTTTTTATCTTCTCCTCCGCTCCTCGGAGCTTCTCGTGGCCCTTTCCTGCGCTTCTTCTATGATCCAGTGGTCCTGGAGTGGCTCTCTCATGCACATTTTGGTGTTTTCTCTGCTGTGACCGCACACGTGATCTACCTGACCGGCTCATTAGCAAGCCCTTGCTGGGGTGAAGTGGGTGTGTTGGAGCAGGGGGTCCCGCACAGCCTGGATTTGGGGGCCTGGGGGTGCCTGGGGCTGCCCGGCCCCTGCAAGTCCGCGGCCGAGGGCACCTGGGCACTGGGGAACTGGAGCGTGGAGGCGGAGCCGGAGCCAGGGCCCAAGTCAGGAGGGCATGATCCAGAGCAGGGGGTCATGCTGAGCACGTTGTGGGAGACGGAGGGGCTGCAGACTCTGGGCATTGTGGTGATTGTGTGCGCCTCCCTCAAGCTGCTGCATCTGCTGGGGCTCATCAACTTCTCTGAGGACAGTGttgaggatgagctggagctgtcGGCTGTGCGTCACCGGCCCGAGGGCCTGGAGCAGCTGGAGGCTCAGACACGCTTCTCACGCAAAGAGCTGCAGATCCTCTACCGTGGCTTCAAGAACGAGTGTCCAAGTGGCGTGGTCAATGAAGACACGTTTAAGGACATTTACTCTCAGTTCTTCCCACAAGGAGATGCGTCCACATATGCACATTTTCTCTTTAATGCGTTCGACACAGACCACAACGGCTCCGTGAGTTTTGAAGATTTTGTAATGGGCCTATCCATTCTCCTCAGAGGCACCGTCCAGGAGAAGCTCAACTGGGCCTTTAACCTGTATGATATTAATAAAGATGGATATATAACAAAAGAGGAAATGTTAGACATCATGAAAGCCATCTATGACATGATGGGAAAATGCACATATCCTATTCTCAAAGAGGAAACTCCAAGACAACATGTGGAGATATTTTTCCAGAAAATGGACAAGAATAAAGATGGAGTGGTCACCATAGATGAATTTATAGATTGCTGccaaaatGATGAGAACATCATGAGATCGATGCAGCTTTTTGAAAATGTCATTTAATACCTGAATGGACACAAAGTCTCTGGTGGCTGGCCAGCTCTGACCGGGACCCTCCAGCTCCACACGCCCTGATCTCCTCATTAAGACGAATGCATCCGAATGAGAGTCACACAATCCATCCATAAAATGCCATTCTCTGGGACTCAAATCCACTTCCTgtcatatttaattaaataacggTTTCCTCCTCCACGCTGTTATTAGTAAAGGATGCAGTACAATGCACTCACCATTTCTCATCAAATACGAGGGCATGCTGGGAAGGAATTCTATTAAAGGGCCCatattctcctttttttttttttttttttcctgtactCTATTGATTTGACTTATGACGTTTCTGTGGATTTATACAgcaaaaacagctgtaattcgTTTGTACGTGAGCTTTTTCTGACTACTCTTTACCCTGCATAGACATGCTGTTTTTGTTGTCCAGCCAATAAGACTGAAGATATGTAAATGTCCTCTGTTTTGATTAGCTGCTTTGTATTATGCTCTGTGTGTTAGAAAAGGTTGAAACACTTATCTCACAACATCAATGTGAGTGAGTAGAGCAAACCTGCTTTAGTTCTGTAGGAAAAGAATGCATAAAGTCACCATCAGAGCGGTGAAACCTGTTTCTCCAAAATATGATTTGCACTtgatatacatttaaatgtattcatgCATTAaatgaagcatttctattga

Function

symbol description
kcnip4 Enables calcium ion binding activity. Predicted to be involved in protein localization to plasma membrane and regulation of potassium ion transmembrane transport. Located in cytoplasm and plasma membrane.

NR:

description
PREDICTED: Kv channel-interacting protein 4 isoform X3

GO: NA

KEGG:

id description
K23855 KCNIP; Kv channel-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678320.1 True 1766 mRNA 0.47 9 28299496 28368962

Neighbor

gene id symbol gene type direction distance location
adgra3 adgra3,LOC107691845 coding upstream 215471 28030757 ~ 28084025 (+)
LOC111194351 NA coding upstream 993821 27301866 ~ 27305675 (+)
LOC111194356 NA coding upstream 1048373 27248351 ~ 27251123 (+)
ndufs2 ndufs2 coding upstream 1183652 27100824 ~ 27115844 (+)
focad focad,LOC101469292,LOC104964325 coding upstream 1264417 26935083 ~ 27035079 (+)
LOC103035875 LOC108437090 coding downstream 42351 28411313 ~ 28445089 (+)
LOC103035569 NA coding downstream 88942 28457904 ~ 28475027 (+)
LOC103035264 LOC108437087 coding downstream 127678 28496640 ~ 28564802 (+)
LOC103034936 LOC108437088 coding downstream 251767 28620729 ~ 28624487 (+)
slc1a1 slc1a1,LOC107691854,LOC107561518,LOC107659129,LOC107552979 coding downstream 370229 28739191 ~ 28758078 (+)
G144866 NA non-coding upstream 328991 27969493 ~ 27970505 (+)
G144858 NA non-coding upstream 388369 27910696 ~ 27911127 (+)
G144856 NA non-coding upstream 411946 27857807 ~ 27887550 (+)
G144845 NA non-coding upstream 548052 27751238 ~ 27751444 (+)
G144833 NA non-coding upstream 641646 27655183 ~ 27657850 (+)
G144948 NA non-coding downstream 6102 28375064 ~ 28377056 (+)
G144953 sec24d,LOC103036498 non-coding downstream 12730 28381692 ~ 28384123 (+)
G144969 frem1 non-coding downstream 199431 28568393 ~ 28570000 (+)
G145007 NA non-coding downstream 405735 28774697 ~ 28775779 (+)
G145009 ctdnep1a,LOC108413724,LOC108414899,LOC108260181,LOC105906669 non-coding downstream 406920 28775882 ~ 28778448 (+)
G144671 NA other upstream 1090905 27206742 ~ 27208591 (+)
G144613 NA other upstream 1487369 26807716 ~ 26812127 (+)
G144584 NA other upstream 1545054 26750835 ~ 26754442 (+)
G144372 NA other upstream 2510654 25786737 ~ 25788842 (+)
G144333 NA other upstream 2645246 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 257082 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 786763 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 1060063 29429025 ~ 29432026 (+)
G145438 NA other downstream 1809242 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 1960496 30329458 ~ 30331665 (+)

Expression


Co-expression Network