LOC103035875 (LOC108437090)


Basic Information

Item Value
gene id LOC103035875
gene name LOC108437090
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28411313 ~ 28445089 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678322.1
TTCAGAGCTCGCAGTGTTTTGGGCAGAGGGAGAGGGGATGGGTGCGGGGGATCACGCGTGGATAACGGGCTGGGGCTTTGGGCTCCAGCACAGCGGAACACAGCCTGACTGCACCCTCAGAGTGGATCAGGTTGAAGATGGCAGCCATGCGTACTTCACCGGTTTGCGTGAGGATGATGAGATAATGTCTGTGAATGGACAGCTGTGTTCCAGCCTCAGCCTTTCAGAGGTTGTTGCTCTTATTCAAGCCTCCAATGATGGTCTGGAACTACTGGTGAAAAGATGCTGTTATCAAGGAAGCTTTCAAACGGTTAGCACCACTCTGCGGATCCCACCGCCACACAGGCCTCATGCTCTGAAGGAACTTTACATCTCCGAATCACAAGATGAAGCGTTTAACGAGGAGACAGACAGTGAAGCTGAAAGCCCTGGACGGAGCCCTAAGGTCAGAACCCAGTTTTGCATTCCAGCTCCAAAGGACAGAATTGGAGCAAACCCCCAAATCtctggaggtggaggaggaacCAGGTTAGAAATCACTCCAGGATCTGTAGTGGAGTTGCAGCTGTCGCTGTCTCAGACCACCCTGGAGGACGTGGGCTGCACCTCACTGGGCAGTGCTCGTGGATTCGAGGGAGAGTTGTACCAGAAAAAAATCACTGAGGAGGACAGCACTACCACTAGCAGCGCACCGGGCTGCACCTTCTACATCCCTCGCCACGAGAGAGAGCCTCTGGGTCAGCGAGGCGTACTGATCAGCGCTTCAGCTGCTCTGCGTGGACAGGTAGAGGTGACCACACAGTCGACAGGGAGGGGCTCTGGAGGGGAAAGGGTGGGGTCTGGTGAGACAGAAGCAAAAGCCAGTGATCAGCCAGTGGATTATGGTGAGGGAGAAGGAGGGCGTACTGAGGAAGCCCCCACCTCCTCTTGTATCTCCTTTGGAATTCCATCAGAAGAGGGGGACTCTGAGTCGGAGAGGGAGCTCAACCAGCCCAACAAGCACCGGGCAAGGCACGCCAGGCTCCGGCGGAGTGAGAGCCTGTCTGAGAAGCAGGTGAAAGAGGCCAAGTCTAAATGTAAGCGCATTGCTCTTCtcctcactgctgctgctcccaACCCCAATAATAAGGGGGTGTTGATGTTCAAGAAGCATAGACAGAGGGCCAAGCAGTACACACTCGTTAGCTACGGAACTGGAGAGAACGAACCAGAGTTCCAGGACGAGGAGGACGAAGACGACGACAACAAGGAGACGCATGCTGTTGAATTTACAGTTCTAGCCACAAGTGAAACTGAACTTGATGAGGATTTCTTCACAAATCCCCCAGGCCACAAAAGCATTGTGACCTTTGACTGGGACACTGGACTACTGGAGATCGAGCGCAAGCTTCAAAACCCAGAAGATATGAATGCACTTCCTGAAACGAAAGGTAAAGGAGCCCTGATGTTTGCCCAGCGCAAACAACGTATGGATGAAATTGCAGCTGAACACGAAGAGTTGAGAAATAAGGGAATCCCGGTCGAAGGAATTCAGGAGGCTGAGAAGCGTTATCAACAGGTGGAACAACACTCTTACATCCAGGCTACTGACAGCCAGAATTACATGGATGTAAACATGCAccaccaacagcagcagcagcagcagtaccaGCAATACCAAGAACAATATtatcagcagcagcaacagcagcaacaaTATCAAGAATACCAGCAGCAGTTGCAGTATCAGCAACAGCATTACCAGCAACAGCAAGAGTACCAGGAACAGCATTATCAGCAACAGCAAGAGTACCAGGAACAGCATTATCAGCAACAGCAAGAGTACCAGGAACAGCATTATCAGCAACAGCATTACCAGCAACAGCAAGAGTACCAGGAACAGCATTATCAGCAGCAGCAAGTGCAACAGTATGCGCAACATGTGAATGGTATGTCCAGCCAAACCAATGCAATGCAGTCATCAGTCATGAATAGAAGTGCCAAGCCATTCTCTGTGCAGAATCAGGCAGCGGCTCCATTTACCCCACCATCTAGTCAGGAGCAACCCTGCTATTCAGCTGGACAGGGTGAACAAATTGCTTCGCGCGATGAGAGAATATCTGTACCAGCGATCAAGACAGGGATCTTGCAAGATACCAGATGGAAGAACAAAGCTAAGCCAATGTTCACTTTCAAAGAGTCTCCAAAAGTTTCCCCGAATCCAGAGCTGTTAAATCTCCTTAACAGGGGTGACAGGAAGGCAGGCTTTGAGTCTGGTCCAGAGGAGGATTACCTAAGTTTGGGGGCAGAAGCCTGCAACTTTTTGCAGTCCCCTAAAGTGAAGCACAAAATCCCACCACCAGTCGCTCCCAAGCCACACATAAACCCTGCCTCTCCACCATGGTCACCACAACCAGAAATCCCAAGCCAGCAGTTCCCTCAGCATGCTGAAAATAACGTCCCAGCAACTGCTGAGGCTCTTGGGCCTGAAGCCGACACTGCCCCTGAAATGGAGTCCTCGGCCATACCACAGCAAGAACCCTCCCCCACACCTGCCCCTGAACTACAGGAAGCTCTCCATAACCCCCCTTCACAGGAACAGCAAGAAGAAGTTGATACATGGAGTGCACCTGAACAACAAATGCAACCAGATCAGCAAAAAGAGCCCTGGAATGAAAATCAACCCCAGCAGCACATGAACAACCATCACCCTGTCCAACCATCACCTCCAGTACAAGCAAAGCCAGAGCCACCTGTAAGCTCTTGGGGTCCATCTTCAACTCAGGCCCCACAGCAGCCCCCTGTTAGTGCTTGGGGTACACCTGAGGTTCAGTCGCAATCTATTGCACAGACTCAACCGCACATGCAGCTACCTTGGGTAACACAACCACAAGCCCTTCCAAAAGTGCAACAGTCATCATCTGTTCATACTCAGTCGCAACTCCAACCTCCTTGGGTGACACAGAGTCCACCCCAACCCCATCCTCAAGCCCATCCTCAAGCTCATCCTCAAGCTCAACCTCAAGCTCATCCTCAAGCTCCACCTCAAGCTCATCCTCAAGCCCAAGCTCAACCTCAAGCCCAGCCTCAACCTCAAATTAATTCTTGGGCCTCAGTTCCAGCTCAGTCTCCACCTCAGCCTCCATGGGCTCAATCCCAAGCGCCAACACAGCCACCTATTGGTGCTTGGTCTCAAGATTTAAATCAGACCCAAGTTCAGCCCCCCTGGATGCCACAACAACAGGAATCCCAGCCAGTACCACCTTGGGCAGCCCCTCAACAACAAGTCCAGCCCCCATGGGCCCAAACCCAGGGTCAGTCACAGCCGCAACCACCCTGGGCATCTCAGGCTCCACAGCAAACTCTACCACAGCCACCTGCAAATGCTTGGACCCAACCTCAGAGTCCAGTACAAGCCCAGCCTCCATGGGTTCAGCAGGCTCAACCACCAACGCAGCCACCAGCACAGATGCAGCAACCCCAGGGTCCTTGGGCCTCAGGACCTAACCAGTCACAACCACCACCACAATGGTCTCAACAGCCTCAAGATCATCCGCAGCAAACGATGAACTCATGGGCACCAGAACAGAACCAAGTACAGCCACCTTGGACTCAGCCACAGCACCCAGCTCAGGCACAGCCACCATGGGTTCATCAACCTCAGCATGAGCAACCACCACACCACTCTCAGAATCAAACTGGTTTGAGTACTTGGGCACCACGTCCTCAGCAAGGTCCAGTCAGTAACACAACACCTGCTGAACCTCAAAAGCTTCCTCCATCAGCCAAACCATGGAGTCCACCTCAGACCACTCAGCCACGTCCCCTACAGAGAATGGGCTCATACACAATTGGAACAAAGGTACCATCCCCCACTCCAACAAGCAGGACAATTTCCCCCACTGGAATGGGTTCAGCGTTCGAGATGCCAGCCCTGCGAGGGAAGGGAGCTGAACTTTTTGCTAAAAGGCAGTCCAGAATGGAGAAGTATGTGGTGGATGCTGAAACAGTGCAAGCAAACAAGGCAAGACCTTCTTCACCTTCACCTTCTTTGCCAACCACTTGGAAATATTCGCCTAATTGCCGTGCTCCTCCACCATTGGCGTACAACCCACTTCAGTGTCCCACATATCCACCAGGTGCTATCAAACAACCTCCCTCTTCTAGCCCTTctataaagaacaaaaataagaacaaagagaaagaaaaacctGCCCCAAAACCTCTTCATGTTCTGGATGTCATGAAGCATCAGCCTTACCAGTTAGATTCCTCTCTTTTTACTTATGGGCCAGCAGCAGAGAAACTTGCTGCAGAAAGGGAGGCGGCTGAAAAGCTTGAGGCTCAGAGAGTGGCTGAAGCCCAGGCTCAAGCCCAGGCTCAAGCTCAAGCACAGGCTCAAGCACAGGCTCAGGCTCAAGCTTATATGCAAGTTGCTGGTCTGCCAAACCAAAACCAGCATTTGCAATATGATCAAGCTGTCCCCTATGGTTTCATACCACAGCATCCCGATCCATCCCAACACCCCTATGGTATGCCTGGTCCCTCACCTTCGATACAAGATGGCCCTTATCACCATGCTCCTCCTAACAGCTATCAGCCTCCCCCTAATGCTTATCAACAAGGTCCTTATCAACAAATGTATAATCCCCAGCATCCTTACCAACAGCCTCCTTCAAATATGTACCAGCAAGCCCCAAGTCCCCCTTACCAGCAGCCCCCTCCATATCAAACCAACCCAAATCCAACCTATCCAGCTGCACCAGCACCAAGCTATCAACCAGCTTCTAATTCTTATGTGGCACCTACGTTCCCAGTAGCACCAAGAGCAGATTCTGCTTCAGGAAACAATATCCTTAATGCTCCGAAACCTAAGTTCTCTGCCAAAAAAAGTGCTGCACAGGTTTGGAAGCCTAGTGCTGTTGAAAATGCTGACAAATAATGTATAGCTAGGATTGAAAGCTGTATATAAGAAGTTTGacaaatttgcagaaaatacatcatatatacacaattatatattatatcacatGTATCACACAAATTAGACGTCTAATCTTAATTAGACTCAATTTAAATGAGTGTACCTCAAACAGGTAATATGAAATGGCCTGAATGCAATGTTTGTCCATCCGATAGTGGAAGAGGATTGTAGAAAAGTGAATGTTGATCAAGGAGGGAAAATAAATACTAGGTCAAAGAAAGATTGTTCAGTTGAGTAAGTATACCTTCCTTACTGCTGAATGCTCTAGTGTGGAAGCCCATTTCTGCAAGATGCTaagttaaaataatgagatagttagtcataattatagatactaagtcataattacgagatgcTAAGTTAAAATTGCGagattcagtcagtcagtcattattatgagatcaTATGAGTCATTGTAATTATGATATGTAATTGTAATAGTAATTATAAAGTCAGTCATATATATtacatactaagtcattattatgagataatCCCAccacttaatatctcaaaactaTGACTAAGTatatcataattatgacttattatctcataattatgacttagtatcttgtAAATATGACTTAGTGGAGGAcccttatttttacttttattttttatgtgaagGAAATGGGCTTTTATACTGTAGACATGACTTTGTAAGACAGAAAACAGTTTTTGCCTGTAGAGTTTGAGTTATTGTTGTACAGTATCTCAGTGGTTTAAGTGAAATATGTAAGTATgaatgtattaaaacatttgaCTGAGCCAAAGTTTGAAAACAGATGCAGTGCAGTCCTGgccattttatatatttaaatgtctatttttattaaatacactgaatatatattttatatattcatatatttattacacCCCTAACTAATTTTAATAGggagctaaagttagctagctgttTGCTAGCTTCTTGTTTAAAAtggtccgttccaccttaaatgcagcagcctTGATAAGTGCTGTtgaaccatttaaggtggaacaggaaatttAGTTAGCTATCTAGATAGTGATACGTGCTACTAGcgattttttatgcttgttatgacaAAAAGagacataaaacattgaaactacattaattattgaagtaaatgtattggttaatATCATTTAAAGCAAAGGAAAGACTACCTTTGTAGTTTTGGTCGCTTGTGGAGCCATCTTGCTGTGATTCTGATAACATGAAGAGGTAGGGGCAAGAGGTGAAATAGGACTGGGCCATATTTCTGGGTCTTTCAATATCCATTGTAACAATAACAGAAAGTGGAGTGTTTCATATCATTAAAAGTCTTTTGTAGATATTGTGTCAGACATATGCATTCAGACATCAGGTGAGGCAGGAAGACAGGGTTTCCTTGTACAACTTTTAAACTCTCATGctcatgtttctgttttttttttttttgtttgtttttttttcagttaaaattCACACAGCATAATTTCCTGCTTCacgctttttattttatttctgtgtttctacATTTAGctctgttatttttgtttttgtgacaaATTTGTTTTCAATTGCtgatataagtaaaaaaatataattattttgtcCTTCTTGTAAAgtgacattttttaaagcaaatttagAAAACATTCATTATGACTGTTTTGTAATTTGCTAGCTTTTTTTCAGTCATTGTCATCATCATGttctatttttcttcttttgtgatTTTCCTTCATAGTGCACTTTCTGTAAGATTTGCTACAGTGCTATTAAAAAGACTCTCTGTCCTTCTGTT

Function

NR:

description
PREDICTED: synaptopodin-2-like isoform X2

GO: NA

KEGG:

id description
K24066 SYNPO2; synaptopodin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678322.1 True 6744 mRNA 0.46 7 28411313 28445089

Neighbor

gene id symbol gene type direction distance location
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding upstream 42351 28299496 ~ 28368962 (+)
adgra3 adgra3,LOC107691845 coding upstream 327288 28030757 ~ 28084025 (+)
LOC111194351 NA coding upstream 1105638 27301866 ~ 27305675 (+)
LOC111194356 NA coding upstream 1160190 27248351 ~ 27251123 (+)
ndufs2 ndufs2 coding upstream 1295469 27100824 ~ 27115844 (+)
LOC103035569 NA coding downstream 12815 28457904 ~ 28475027 (+)
LOC103035264 LOC108437087 coding downstream 51551 28496640 ~ 28564802 (+)
LOC103034936 LOC108437088 coding downstream 175640 28620729 ~ 28624487 (+)
slc1a1 slc1a1,LOC107691854,LOC107561518,LOC107659129,LOC107552979 coding downstream 294102 28739191 ~ 28758078 (+)
phf23 phf23,LOC108413721,LOC107687050,LOC107687030,LOC107561685,LOC107593540 coding downstream 362903 28807992 ~ 28814308 (+)
G144953 sec24d,LOC103036498 non-coding upstream 27190 28381692 ~ 28384123 (+)
G144948 NA non-coding upstream 34257 28375064 ~ 28377056 (+)
G144899 NA non-coding upstream 36329 28282468 ~ 28374984 (+)
G144866 NA non-coding upstream 440808 27969493 ~ 27970505 (+)
G144858 NA non-coding upstream 500186 27910696 ~ 27911127 (+)
G144969 frem1 non-coding downstream 123304 28568393 ~ 28570000 (+)
G145007 NA non-coding downstream 329608 28774697 ~ 28775779 (+)
G145009 ctdnep1a,LOC108413724,LOC108414899,LOC108260181,LOC105906669 non-coding downstream 330793 28775882 ~ 28778448 (+)
G145013 NA non-coding downstream 349133 28794222 ~ 28796628 (+)
G145105 NA non-coding downstream 402856 28847945 ~ 28850850 (+)
G144671 NA other upstream 1202722 27206742 ~ 27208591 (+)
G144613 NA other upstream 1599186 26807716 ~ 26812127 (+)
G144584 NA other upstream 1656871 26750835 ~ 26754442 (+)
G144372 NA other upstream 2622471 25786737 ~ 25788842 (+)
G144333 NA other upstream 2757063 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 180955 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 710636 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 983936 29429025 ~ 29432026 (+)
G145438 NA other downstream 1733115 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 1884369 30329458 ~ 30331665 (+)

Expression


Co-expression Network