LOC103035878


Basic Information

Item Value
gene id LOC103035878
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24783105 ~ 24802986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678327.1
aggcgtcATGAGTTGTCAAAGtgtgagtgaggcctgatagtgggtgccagatggatgggacattccatttccatAGTTTAATATTCCTCAAGACAAGTGTCCTGTTCACTGTGTAAACATTATACAAGACATTACCATTACCACCcccagtggacagtgcagtagtAGTGGGTGGTAAAGACTGTGACGGGAAgtttctggctagaattgtccgtgtGAACAACAGACAAGCGACTcaggcagaaatcacatccacattttgTGCAGGAGACCCAACATATCCCAGCATCCCTTGACATGTGGGATATCAGTATATGATTGCATAATAGTATTTTGTACATATCTTGCAGTCCTAACTAACACGATTACAGTCGATTGATTTAGCTAACCAGACTATCTGAACTTTACTCTTCTTAAATATATGGAGAAAAGTATACAATGTAATCTCAAACCCAACTAATCCAAATCTAGGTTTTTGTTCCAAGTTGTGAAGATACCTTCCAGTGCACCTGGCTGACCAGTATTTTTGGGTGATGTGGTGTCATCAATAGgctatttacaaaaatatataatttgcaAATGAGGGAAGTCTGTGGTCAGCTAGTGACGTCTATAAACCTAAACAGCACGTCTTTTGTGTTCTCACCCCCACTGCTCTTTAAATAAGCTTTCTGTTCCAGGTCTGCTGCTTCTTTTACATGATGTCGACCAAATGCAAATGTTGAACTGATAAGTACAGTATTTCCTGGAGATGTTGGTTCTCGGAATCATACTCAACAGAAACATACAAACAGACTGAACACAGAATACTATCAGCGGTTCATAGCTTTGCTTTAAATTAAAGTGGTTTCATTTGTGCTCTTTATTCAACAAGTAGGGACAATACTTGGGACAGTTCACAAGATGGTTCTGCTGGGGCCACTGCTTTTGGCAGTGGTCTCTGTAATCTGGGCTGAGGAGGATTACTTTATTAATGGAACGCTCAATTACACATGGGACAACGCCAGGAACTATTGCCAGATCTGCTACAAAGACCTGACAACAATGACCCCAGGAAATGCCCATATCATTATTCAGAAAGTCATCGCTCTGAATCTCACCTCTGGCTACTGGATTGGGCTTCGTGAAAACTTCAGCGGACCCATTCCATTTTCTCAGTGGTCTAATGGTGCCCCAGTTATCTACCAGAACTGGTATCCTGGTCGCCCTATCCTAAAGAAACCAGAAGTGTTTGTGCCAACATCTCCACCCCCAACTACTAGTACTGATGGTACTACTACTTCCTATGATAGTACTACCACTGCTGGCACTACTACTCATTCTACAACTGCTGGCACTACTACTCATTCTACTACTGCTGGCACTACTAGTACTTCTGGTACTACTCATACTTCAAGCACACCCATTGACGAGCAAATACTTTGTCCAACTTTGGCAAAACTCATTGCTTGTTTTAATGATACAGAGTACATTGTCACTCCCATCACAGATAATGAATTTAGCACTAGTAAATCGAGCACACTCATTATCACCAGTAGTCCTGCTGTTAGCAGCACGTCCCCAAGTACAATACGCAGCACATCCTCCAGTACGATACGCAGCACATCCTCCAGTACGATGCTCAGCACATCCTCCACCACCTATACAACTACCACAGCCCTTATCACCAGTCCATCTACCAGTCTCATGACATCTACCAGTTACTCTACTCCCATTCCAGAAACAGATTATGACTATATCACAGACTCTTGTGTGGCCTTGCTCAGCTTCGGCATGTGGCGGGAAAAGCACTGCTATGAAAGCCTGCCCTTCATCTGTTATGATGAACGATTTACTGGGACGGTGAAAATATCCAATGTGACGCATGGAGGAAGTGTTGTGACCTGGGACAAGGCACCAGGGGACAATGTGGATCACTACAAAGTGGAGCTACATAGGTCCATCAATACCACAGCCGTCAATACCACAGTGTTCACTACCATAGAGTTCCAAAACTTGGAGGCAGGAAAACTCTACACAGTCAAAGTATTCCCTGTGAAGTGCGGCCGGAATCTCAGCTCTCTAAATACCACGTTCTACAccttgCCAATGTCAATCAGCACTTTAACAAAAGTAGAGGTAACAACCAACTCCATTGCTCTCAATTGGAGCAAACCTGAAGGAGGGTGTGATAATTATTATGTAAAGTATGTTGTAAATGGGACTGAACATGAAAATAAATCCCTCAAAATGGAATACAATATAACCGGTCTTCTACCAGGACTACTTCACAATATTACAGCTCGATGTGTGGTCAACGACAGCATATTTGGAGAACCAAGCAAGTTTGAATTAGCCTACACTAaacctTCTCGGGTACAGAATCTCACATCTTCAAACAATGAGAGTTCCAGTGTACACGTCACATGGAGTTCAAGTGATAGCAACAGTTCGAGTTACTCATACCTTCTTATTTTAATAGagaatgttaataaaaataaaataataaatgaaacaaatacAATTCCGGAGAGTACTCTGAAGGGACTCACACCAGGTACAGAATACACCTTGAGTGTGTCAGCGCTGGTTGGTAACCCCTCAGTGAAAGGAGAGGCAGTTAACATCAATGTCTTTACCATGCCTAAGCCAGTCACAAATCTCACTCTAAAAAGCACAGAAAATACCATTCATGCTACTTGGGATCTTACGAATGGAAGTTTTCCATATTTCAGAGTACAgctatttttaaacacaaaaatggaggaacaacaacaacaacaacaacagaaaaGTCCTACAACTTTTCAAACCTAATGTCAACAACACAGTACATCGTTTCAATTTCCACAATCATAGGCAATCTCTCAAGCTGTCCAGTGAATGAAACGACTTATACACTTCCTAAACCTCCTACAAACTTGAACATTACGGTTCTTAATCAGACTCACATAGAGCTGAAGTGGAACCCTCCTGCAGGTGTAAATTCATCACAGAATCTTAAATACAACGTGGCGTACATGGCTCCGTTTTGGAGCATATCTCctgaaacatttaatacaaCTAAAAATTCTACAGTCATTTCTAATTTAACATCTGGGACAAAGTACTGTTTTAATGTCAGTGTCTACGCTGGCAATTTGATGAGTGACCCAGTCCACCAGAATGCTTCAACAGGTAACAAAATTCTTTTTAGAAAAACAGTTCTTCAaacttttaaacctttaaaatctAGGCAAATTTCATAGtatttactgaatcatttgtagtagatacagatatagcTTGTTGTAGATAAAGAATCATTTAGATACTCAGA

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678327.1 True 3298 mRNA 0.41 7 24783105 24802986

Neighbor

gene id symbol gene type direction distance location
LOC103037427 NA coding upstream 1913 24769347 ~ 24781192 (+)
LOC103036193 ybx2 coding upstream 49332 24713729 ~ 24733773 (+)
gps2 gps2,LOC106608669 coding upstream 78677 24693102 ~ 24704428 (+)
LOC103038819 H2AFZ,h2afvb,LOC103038819,LOC105895420,LOC102200939,LOC107706756 coding upstream 93519 24686265 ~ 24689586 (+)
ddit4l ddit4l coding upstream 121998 24657413 ~ 24661107 (+)
LOC103035573 NA coding downstream 7991 24810977 ~ 24813754 (+)
LOC103033974 NA coding downstream 92627 24895613 ~ 24911351 (+)
LOC103047006 NA coding downstream 130385 24933371 ~ 24949400 (+)
LOC103032175 LOC103032175,LOC108440822,LOC108242286,LOC106526854,LOC103359706,LOC107731898,LOC107679257 coding downstream 204036 25007022 ~ 25037257 (+)
LOC103031648 NA coding downstream 249049 25052035 ~ 25073701 (+)
G144014 NA non-coding upstream 92930 24689795 ~ 24690175 (+)
G144000 NA non-coding upstream 354607 24428062 ~ 24428498 (+)
G143973 NA non-coding upstream 499955 24282034 ~ 24283150 (+)
G143964 NA non-coding upstream 593223 24189634 ~ 24189882 (+)
G143928 NA non-coding upstream 711209 24066946 ~ 24071896 (+)
G144038 NA non-coding downstream 12878 24815864 ~ 24816084 (+)
G144113 NA non-coding downstream 47904 24850890 ~ 24851126 (+)
G144125 NA non-coding downstream 114700 24917686 ~ 24917987 (+)
G144132 NA non-coding downstream 132839 24935825 ~ 24936380 (+)
G144134 NA non-coding downstream 133429 24936415 ~ 24936800 (+)
G144017 NA other upstream 71572 24707083 ~ 24711533 (+)
ppp3ca ppp3ca,LOC103369319 other upstream 180703 24436379 ~ 24602402 (+)
G143836 NA other upstream 867023 23827948 ~ 23916082 (+)
LOC111194174 NA other upstream 1376211 23403688 ~ 23406894 (+)
LOC111194251 NA other upstream 1387865 23385168 ~ 23395240 (+)
LOC111188189 NA other downstream 53786 24856772 ~ 24876737 (+)
LOC111194253 NA other downstream 90006 24892992 ~ 24894553 (+)
G144146 men1,LOC107660721 other downstream 195787 24998773 ~ 25004171 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other downstream 573012 25375998 ~ 25378765 (+)
G144290 NA other downstream 669137 25472123 ~ 25474694 (+)

Expression


Co-expression Network