LOC103047006


Basic Information

Item Value
gene id LOC103047006
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24933371 ~ 24949400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678328.1
ATGAGAGCAGCTCACGCTGTGCTGCTCACTCTCCGGCTCTCGACGTATCTGTCCGACAGCAACATCTATCGGTTAGGAAaatgtCAGAATGGTTGGTCCCAGTTTGGACATCGCTGCTTTATGATCTTCAAAAACTCAGCTGACTGGCCTGCCTCTGAGGAAAACTGTGTGGCTATGGGTGGACACCTTGCGTCCGTGCACAGCAGTGAAGAGCACACCTTCATTGTAAATTTAGTGCtgaatgcaagcagttcagacTCAGCATGGATTGGTGGCAGTGACACTGCACAGGAAGGAGCGTGGGTATGGACAGATGGGTCAGCATTCAGTTACACTTACTGGAATAAGGGAGAGCCTTCTAATTATGGACAATGGGAGAACTGTATGGAGATAAATTATCATGAGTGCCAGGATGGTTGGCTCCAGTTTAAATCTCACTGCTTTAAGGTTTTTACAACAAACGAAAACTTTAAAACTTCTGAGGAAAACTGTGTGTCTGCAGGAGGACACCTTGCGTCTATGCACAGCAATGCAGACAATGTTTTCATCAAGGATTTGGTTTGGAACACAACTAACTCAAACGCTGTAACGTGGATAGGAGCCAGGGATGCTGGACAGCTGGGCAAGTGGGTGTGGACAGATGGATCAGCATTTGATTACAGTATCTGGTCTAATGGGCAGCCTGATAAACACAGTCCTTTGGAACAGTGTGTGGAGATTAATTATCTGGatcagTGGAATGATGCAAACTGTGACAACAGACATCCATCAGTGTGTGCTAaAAGAATCACCTCACAATCTGCTAACCCATCACCAGtGAGGATGATACACCTGCAGCTCAAAATGACTTCAAATGAAGATTTAATGGCAtctaatattaaagtatttgctgaacagCTCAAAGAGAAGATGATAAAAAAAGGACTGCCCAACAACTTTACGCTTTATTTCAAACAGCTTCAGAAGAAGTCACCCTAGGGTACGGAAGGCAGATTTATGATGGTTGGGGGTGGAAGGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678328.1 True 1021 mRNA 0.45 11 24933371 24949400

Neighbor

gene id symbol gene type direction distance location
LOC103033974 NA coding upstream 22020 24895613 ~ 24911351 (+)
LOC103035573 NA coding upstream 119617 24810977 ~ 24813754 (+)
LOC103035878 NA coding upstream 130385 24783105 ~ 24802986 (+)
LOC103037427 NA coding upstream 152179 24769347 ~ 24781192 (+)
LOC103036193 ybx2 coding upstream 199598 24713729 ~ 24733773 (+)
LOC103032175 LOC103032175,LOC108440822,LOC108242286,LOC106526854,LOC103359706,LOC107731898,LOC107679257 coding downstream 57622 25007022 ~ 25037257 (+)
LOC103031648 NA coding downstream 102635 25052035 ~ 25073701 (+)
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107709062 coding downstream 140431 25089831 ~ 25170403 (+)
mta2 mta2,LOC107731904,LOC107679264,LOC107558444,LOC107660724 coding downstream 222638 25172038 ~ 25204911 (+)
LOC103030689 LOC103030689,LOC108440851,LOC108268299 coding downstream 258257 25207657 ~ 25210088 (+)
G144125 NA non-coding upstream 15384 24917686 ~ 24917987 (+)
G144113 NA non-coding upstream 82245 24850890 ~ 24851126 (+)
G144038 NA non-coding upstream 117287 24815864 ~ 24816084 (+)
G144014 NA non-coding upstream 243196 24689795 ~ 24690175 (+)
G144000 NA non-coding upstream 504873 24428062 ~ 24428498 (+)
G144139 map4k2 non-coding downstream 9311 24958711 ~ 24959188 (+)
G144160 NA non-coding downstream 126896 25076296 ~ 25080337 (+)
G144164 ecsit non-coding downstream 133238 25082638 ~ 25087483 (+)
G144169 NA non-coding downstream 178894 25128294 ~ 25128684 (+)
G144170 NA non-coding downstream 187338 25136738 ~ 25137486 (+)
LOC111194253 NA other upstream 38818 24892992 ~ 24894553 (+)
LOC111188189 NA other upstream 56634 24856772 ~ 24876737 (+)
G144017 NA other upstream 221838 24707083 ~ 24711533 (+)
ppp3ca ppp3ca,LOC103369319 other upstream 330969 24436379 ~ 24602402 (+)
G143836 NA other upstream 1017289 23827948 ~ 23916082 (+)
G144146 men1,LOC107660721 other downstream 49373 24998773 ~ 25004171 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other downstream 426598 25375998 ~ 25378765 (+)
G144290 NA other downstream 522723 25472123 ~ 25474694 (+)
G144333 NA other downstream 703606 25653006 ~ 25654250 (+)
G144372 NA other downstream 837337 25786737 ~ 25788842 (+)

Expression


Co-expression Network