XLOC_000723 (nlrc6)


Basic Information

Item Value
gene id XLOC_000723
gene name nlrc6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54766943 ~ 54785183 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001202
GATCTCGAAATTGTGTCGAAACGttagtttcacgtcagccatccctaccattcagtccAAATGCAAAAATCAAAGTCACCAGAGTCCAGTGTTGCGTCTGTGACGAGTGACCAGTCCACGGACCCTCCACAGAACTATAGAGGACACACAGAGCTAACATTTAGCCATGATCATCTACATGCTGAAGTTCACAAGACATTCAGATCAAATCTGCTGACAAAGTTTCAGTGTGTGTCTGAGGGAACAGCGACAGATAAATCCCCAACACTGCTGAATGAGATCTACACAGAGCTCTACATCACAGAGGGAGACAGTGGAGAGATCAATAATGAGCATGAGGTGAGACAGATCGAGACTCAATCCAGGAGATCAACAACAGAGGACACACCGATCCAATGCAGAGACATCTTTACAGCTTTACCTGGACAACACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATCGGGAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAACCTGATGAAGGACAGAACACTCAGTCTGGCAGATCTCCTGCATGTGTTTTTCCCTGAAACCAAAGAGATGGAGATATCCAGAGACGGATATAAAGTgttgttcatctttgatggtctggacgAGTGTCGTCTGTCTCTGGACTTTAACAGTGGAGTGAAACTGTGTGATATTTCTGAATCGGCCTCAGTGGAGGATCTGCTGATGAACCTGATTGCGGGgaatctgcttccctctgctctcatctggatcacctccagaccagcagcagcagatctcATTCCCTCTGCGTTTGTCCATCGACTGACGGAGGTACGAGGCTTCACTgaccctcagaaggaggaatacttCAGGAAGAGGATCAGAGATCAGAGACTGGCTGATGAAATAATCCAACATCTGAAGTCCTGCAGGAGCCTCTtcatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGGAGATGATGAGGGGATCACGTAAAGGAGAGATTCCCAAgactctgactgagatgtacacacacttcctGATCATTCAGACCTGCATCAGACATGAGAAGCACTATGAGAAGAAGCTGAAGGACGAGGAGATGATCCTCAAACTGGGGAAACTGGCTTTCCGGCAGCTGATGAAAGGCAACCTGATcttctatgaggaggacctgagaGAGTGTGGCATTGATGAGAGCGAAGCCTCCGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGCTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGCATTCAGGAGCATCTCGCAGCTCTTTATGTGCTGCTTTCATTCCTGCTGTACGAGAGAGATGAGCTCAGTGAAAACCGCAGATCAAAATATGCACATTGGTTCAAACGTCAGACAATCTCTGACCTGCACCAGAGAGCCGTGGACAAGGCTCTGCAGAGCAGAAATGGACATCTGGACCTCTTCCTCAGATTTCTTCTGGGTCTCTCATTGAAATCTAATCAGAGACTCCTGAACAATCATCTGACACAGGTTGGAAACATCTCATACAGTCAAGAGAAAACAGTCGAGTACattaaaacacaaatcaaaatgAATCCTTCACCAGAGAAATCCATCAACCTGTTCCTCTGTTTAAATGAACTGGGTGATCATTCTCTCGTCAATGAAGTCCAGGAGTATGTCAGATCTGGAGATCTTTCAGGCAGCAGATTCTCCTCCTCTCAGTGGTCAGCGGTGGTCTTTATTTTGTTGACTTTAGAGCAGTTGGATGAGTTTAATTTAAGAAGATATGTAATAGGCTATGGACAccagacacaaacacaaaagtTCCAGACACCTGATAAAGTTCTTCAGAAGCTCCTGCCTGTAGTTGAAGCCTCCAGATCAGCTGTGTTGTTTGATTGTGGCATCTCCGATAaaggttgtgctgctttggcttcagCTCTAAGATCAAACTCCTCAAACCTCAGAGAACTGGATCTGTCTTATAATATTGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGATcctcactgtaaactggagaaactGAGGTTAAGGTGTTGTGGCGTCTCAGATGAAGGTTGTGCTGATTTGGCTTCAGTTCTGAGATCAAACTCCTCAAACCTCAGAGAACTGGAGCTATCTAAGAATATTAATGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGATcctcactgtaaactggagaaactGAGGTTGGGTTATTGTGGCGTCTCAGAtgaaggttgtgctgctttggcttcagTTCTGAGATCAAACTCCTCAAACCTCAGAGAACTGGATCTGTCTGATAATAAAATAGTAGATTCAGGAGTGAAGCGGCTCTCTGCTGGACTAAAGGATCCTCagtgtaaactggagacactgagGTTGATCAATTGTGACGTCTCAGGTAaaggttgtgctgctttggcttcagctctgagatcaaactcCTCAAACCTCAGAGAACTGAATCTGTCTGAGAATAAAGTAGGAGATTCAGGAGTGAAGCGGCTCTCTGCTGGACTGAAGGATcctcactgtaaactggagaaactGACGTTGAATTATTGTGGCGTCTCAGATGCAAGTTGTGCTGatttggcttcagctctgagatcaaactcCTCAAACCTCAGAGAACTGAATCTGAAATGGAATAGAGTAGAAGGTATTGGAGTGAAGTGGCTCTCTGATTTAAGAGATGATCCACATTATAAACTGGAGACACTGCATATCAGCTGGGGTTTTATATGTTGAATGTGGAGTCTCTACAGACACATTAAACTGTACAGAAGTGAAGTGTCAGTAATCGTGCTGCTGGAGTTTATAAAGACTCTGCTGGACGACTAAACATCATCATCAGTGACTGAAACACTCCATCATTAATGTGCATCAGAGAAGAGGAAGAAATGCTGCAGGAACTGCTTTATTCATATCTGCTCACAGAGAAACTCAATGCTGCAGAATTAAAACACAAATAAGCGGATGCTCTTTCTGTTTCCTCCACCTGTGATGGAGCACGTCATGAAGAGAGAAAACCACGAGAAAACAGAGAAACTTTCTGTCTCTTCACACATGTGAGATGATTCTGGACAGTGTCGAGTGATTCAGCTTTCCTTCAGTCTGACTAAAGAGAAACAGCGGCATATTGAAGAGTGACATGATCCAGTTCAGGAGATAATTACTCAagattaaatcatttattcataattacaTCAGTCACCATGTCACATTCACACATGTTTAAATATCTCACTAGTCAGGCTGATTTACAGTTTCTACTATTTGTTACTTTTTATATTGTAAATTGATGCACAGGAAAGTGACAGTATTACTATATTAAAAGTGTTTTGGTTTATAATATGACACAGTAGCAGTTTGTTTATTATctgtatgtattgtttttaatacatttcctCATATCCGTTTTCAGTTTGATTATAATGTGCACTGTGTCATAAACTACAATATTACATCTATGCATTATATTGTTTAAACAAAgcagattttatatttttatctttatataACACACTCTCTGGTCTTTATATTTCAGTATTTTTGTTATGATTGTCTTCATGAAAGTGTCTCAACAGCAAATGATTTTAATAAAAGTGTGAATAAATCA
>TCONS_00001203
GTCGAGTACattaaaacacaaatcaaaatgAATCCTTCACCAGAGAAATCCATCAACCTGTTCCTCTGTTTAAATGAACTGGGTGATCATTCTCTCGTCAATGAAGTCCAGGAGTATGTCAGATCTGGAGATCTTTCAGGCAGCAGATTCTCCTCCTCTCAGTGGTCAGCGGTGGTCTTTATTTTGTTGACTTTAGAGCAGTTGGATGAGTTTAATTTAAGAAGATATGTAATAGGCTATGGACAccagacacaaacacaaaagtTCCAGACACCTGATAAAGTTCTTCAGAAGCTCCTGCCTGTAGTTGAAGCCTCCAGATCAGCTGTGTTGTTTGATTGTGGCATCTCCGATAaaggttgtgctgctttggcttcagCTCTAAGATCAAACTCCTCAAACCTCAGAGAACTGGATCTGTCTTATAATATTGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGATcctcactgtaaactggagaaactGAGGTTAAGGTGTTGTGGCGTCTCAGATGAAGGTTGTGCTGATTTGGCTTCAGTTCTGAGATCAAACTCCTCAAACCTCAGAGAACTGGAGCTATCTAAGAATATTAATGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGATcctcactgtaaactggagaaactGAGGTTGGGTTATTGTGGCGTCTCAGAtgaaggttgtgctgctttggcttcagTTCTGAGATCAAACTCCTCAAACCTCAGAGAACTGGATCTGTCTGATAATAAAATAGTAGATTCAGGAGTGAAGCGGCTCTCTGCTGGACTAAAGGATCCTCagtgtaaactggagacactgagGTTGATCAATTGTGACGTCTCAGGTAaaggttgtgctgctttggcttcagctctgagatcaaactcCTCAAACCTCAGAGAACTGAATCTGTCTGAGAATAAAGTAGGAGATTCAGGAGTGAAGCGGCTCTCTGCTGGACTGAAGGATcctcactgtaaactggagaaactGACGTTGAATTATTGTGGCGTCTCAGATGCAAGTTGTGCTGatttggcttcagctctgagatcaaactcCTCAAACCTCAGAGAACTGAATCTGAAATGGAATAGAGTAGAAGGTATTGGAGTGAAGTGGCTCTCTGATTTAAGAGATGATCCACATTATAAACTGGAGACACTGCATATCAGCTGGGGTTTTATATGTTGAATGTGGAGTCTCTACAGACACATTAAACTGTACAGAAGTGAAGTGTCAGTAATCGTGCTGCTGGAGTTTATAAAGACTCTGCTGGACGACTAAACATCATCATCAGTGACTGAAACACTCCATCATTAATGTGCATCAGAGAAGAGGAAGAAATGCTGCAGGAACTGCTTTATTCATATCTGCTCACAGAGAAACTCAATGCTGCAGAATTAAAACACAAATAAGCGGATGCTCTTTCTGTTTCCTCCACCTGTGATGGAGCACGTCATGAAGAGAGAAAACCACGAGAAAACAGAGAAACTTTCTGTCTCTTCACACATGTGAGATGATTCTGGACAGTGTCGAGTGATTCAGCTTTCCTTCAGTCTGACTAAAGAGAAACAGCGGCATATTGAAGAGTGACATGATCCAGTTCAGGAGATAATTACTCAagattaaatcatttattcataattacaTCAGTCACCATGTCACATTCACACATGTTTAAATATCTCACTAGTCAGGCTGATTTACAGTTTCTACTATTTGTTACTTTTTATATTGTAAATTGATGCACAGGAAAGTGACAGTATTACTATATTAAAAGTGTTTTGGTTTATAATATGACACAGTAGCAGTTTGTTTATTATctgtatgtattgtttttaatacatttcctCATATCCGTTTTCAGTTTGATTATAATGTGCACTGTGTCATAAACTACAATATTACATCTATGCATTATATTGTTTAAACAAAgcagattttatatttttatctttatataACACACTCTCTGGTCTTTATATTTCAGTATTTTTGTTATGATTGTCTTCATGAAAGTGTCTCAACAGCAAATGATTTTAATAAAAGTGTGAATAAATC

Function

symbol description
nlrc6 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-8264 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000091320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001202 False 3748 mRNA 0.43 9 54766943 54785183
TCONS_00001203 True 2097 mRNA 0.39 7 54773877 54785182

Neighbor

gene id symbol gene type direction distance location
XLOC_000722 pi4k2a coding upstream 11387 54737353 ~ 54755556 (+)
XLOC_000721 NA coding upstream 66188 54698173 ~ 54700755 (+)
XLOC_000720 knop1 coding upstream 72931 54683655 ~ 54694012 (+)
XLOC_000719 gprc5bb coding upstream 86840 54673846 ~ 54680103 (+)
XLOC_000718 si:ch211-202h22.7 coding upstream 107020 54650048 ~ 54659923 (+)
XLOC_000724 si:ch211-196h16.4 coding downstream 48936 54834119 ~ 54861588 (+)
XLOC_000725 si:ch211-196h16.5 coding downstream 80369 54865552 ~ 54889501 (+)
XLOC_000726 zfyve27 coding downstream 104550 54889733 ~ 54907823 (+)
XLOC_000727 golga7ba coding downstream 123712 54908895 ~ 54931913 (+)
XLOC_000728 r3hcc1l coding downstream 162876 54948059 ~ 54958463 (+)
XLOC_000715 NA non-coding upstream 153464 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 297654 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding upstream 362796 54401933 ~ 54404147 (+)
XLOC_000710 CABZ01067150.1 non-coding upstream 580787 54186039 ~ 54186156 (+)
XLOC_000729 NA non-coding downstream 174309 54959492 ~ 54985297 (+)
XLOC_000733 CU467849.1 non-coding downstream 343282 55128465 ~ 55128579 (+)
XLOC_000735 NA non-coding downstream 399581 55184764 ~ 55191262 (+)
XLOC_000741 NA non-coding downstream 529291 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 541383 55326566 ~ 55343851 (+)

Expression


Co-expression Network