LOC103021832


Basic Information

Item Value
gene id LOC103021832
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31512315 ~ 31517985 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678425.1
ACAGATTGTTGTGCCTGAGACTGCtgatttttaacagtgtagttTTAGAGTGATATCTTTAAAAAGCTGCTATCAGTGTAATATTGTGAAATGTCACACTCCGAGGAAGAGGGCGCGTGCTCAGAAGATGCTGCACCTATATCCAAGTTATCATGGAGTTCCAAATCTGAGCAGAAAAGAAGGGTACGAGAATGGCCATCTTCACAAGTGGCAGCCAAACCTGTTACACTACTAACATGTGGCCATGTAATGCCACAAGATTACCTCATCTCATGGTGCAAGTACTGTATTAAAcagaaAAGGACTGAATTCCTGTGCCCCACCTTTgatgaggagagaaagaaaacatgtgGGAAAAGGTTTTCTTATCACGACTTGTGTCAGTCAGCTTCACTATCTCctgaagaaaaagagaattttGAGGAAAGACTTGGTGCACTAACTGCTGCAAAGCTCTGTGAATATAAACCTTGTCCAGGGTGTCACTCATATGTGGACAGagataataagaaaaatctGTGCGTGCGCTGCACCATCTGCACTGGCAGGGACGGAAGCACCTATGAGTTCTGCTGGATTTGCATGCGGCAGTGGAAGGGGCCCACCGTCAGTGCCCAGAAATGTGGGAACAGCGGCTGTGGAGACAAAGCAGTTGGTCCACCTGATCCTCTTATTTTATGTCAGCCAGAATTTAAACaagagaaaatcagaaatgaGACAGATGATGTATACCCAATGAAAGACAAATCTAGTGGCAGGAAGCGTCTTGCATTGCTCATCAACAACATTAAATTTGAATACTTAAATGACAGAGCAGGGGCAGAGATAGATGAACTAAGCATTGAGAAGCTTTTTGAAGGCCTGGGCTATACCCTAGTAACACTTAGGAATCTGACTGCCCAGGGTATGGACACTGCCTTGCGAGACTTCTCCCAGCGAGAGGAGCACAAACAATCAGACAGCTGTTTTGTGGTGGTAATGTCCCATGGAGATGACACTGGAATATGTGGCATTTCTCATATAGATGATAATCACGAGGATATCTTCCCTACGGCTATTATCTTTGAACACCTGAACACGCCAAACTGCGCTGGACTACGTGACAAGCCAAAAATCATACTTATCCAGGCATGTAGAGGAAAGGAAGATGGAGAAGTGTTTGTAGAAGACAGTGGAAATCGGAGCAAAGGACAGCACCGGGAGAAAGACTTCTGCTGCATGAGGTCCTCGACTCCAGataCTGTGTCATACAGGAATCCAGAGACTGGTACCTACTTCATTCAGAACACTGTGAAAATATTCAACCAGCATGCCCACCAGGATCATGTTGAAGAGCTGTTTAGAAAGGTTCtcaagacatttaaaaagagcTATCCCTTTCAAATGCCATGCAAAGAGAGAACAACACTGTTAAAGAAATTTTACCTTTTTCCTGGGCTATAAGTGAATGCATTGTGTGAAATGTGGCATTGATCTTTTTTTGCGTGAtagttaataatttataatgagCCTTCGCACTCAGCTGACAATGATATATTATTATCTCACATGTGTGATATTttagtaaatgtatgtattaacAAACTGTGGGGAAAGTATTGGATACACCAATTTTGCAAGCCACCAGGGACAAAACTGAAGAGCTGCTCAAGGGTGGGATGAGCTACAGGACAATAGACAAGCAGCTTGGTGAGAAGGCAAAAACTGTTGGCACAGATGTTGGAAAATGGAAGAAACACAAGATGACTGTCAGTCTTTCTCGGTCTGGGGCTTCATGCAGGATTTATCCTCATGGGGTAAGGATGATTCTAAGGAATGTCAGGAATCAGCCTAGAACTAGGTGGATCTTGTCAGTGACCTGAAGAGAGTTGGATTGCAGTCTTAAAGATTACCATTAGGATCTAAATTCTGCAGGGCTCACAAGGTCCTTCGTGCTCGGACAAAGAAGAAGGTCCCAACCAGGAAGCATGAGGGTTGAAACATCATACTATGGGGGTGATTTCTTCAAAGGGGACAGGACAACTGCATTATATTGAAGGGAGGATGTATGAGGTCATGTATCGTGAGATTAAGGATAggtcgtggctgggtcttccaacatgacaatgacatAAATAGCACAGCCAGGGCAACTAAGGAGTGGCTCCCTAGGtagctttttaaaaatcctAAAGAAGCTCTGGTTGGAGGAGTGGGCCAGGAAACATATGACCTCTGTAATTGCAAATAtcaagttatttttttctattgtatcaaatacttattctatgcaataaaatgttaattcataatttaaatgtgattttctggTGCTGGTGTCTTTGAC

Function

GO:

id name namespace
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01370 CASP1; caspase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678425.1 True 2326 mRNA 0.43 11 31512315 31517985

Neighbor

gene id symbol gene type direction distance location
tkfc tkfc,LOC107094664 coding downstream 94609 31407362 ~ 31417706 (-)
LOC103037388 LOC103037388,LOC108434601,LOC108267726,LOC107675486,LOC105895467 coding downstream 106957 31386254 ~ 31405358 (-)
LOC103038032 NA coding downstream 128006 31375693 ~ 31384309 (-)
ovol1 ovol1,LOC103038355,LOC108434587 coding downstream 143619 31361438 ~ 31368696 (-)
mus81 mus81 coding downstream 153103 31350210 ~ 31359212 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding upstream 10617 31528602 ~ 31546260 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding upstream 48933 31566918 ~ 31572825 (-)
LOC111194360 NA coding upstream 74306 31592291 ~ 31594387 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding upstream 124339 31642324 ~ 31655109 (-)
sh3tc1 sh3tc1 coding upstream 138849 31656834 ~ 31678546 (-)
G145902 NA non-coding downstream 21935 31489823 ~ 31490380 (-)
G145895 NA non-coding downstream 30320 31481572 ~ 31481995 (-)
G145798 LOC108434604 non-coding downstream 219926 31287506 ~ 31292389 (-)
G145777 NA non-coding downstream 345567 31166297 ~ 31166748 (-)
G145776 NA non-coding downstream 347630 31162519 ~ 31164685 (-)
G145917 NA non-coding upstream 42993 31560978 ~ 31561283 (-)
LOC111194380 NA non-coding upstream 67087 31585072 ~ 31590976 (-)
G145929 acox3 non-coding upstream 81511 31599496 ~ 31605450 (-)
G145937 NA non-coding upstream 106743 31624728 ~ 31626952 (-)
G145956 NA non-coding upstream 137870 31655855 ~ 31656261 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 9654 31499916 ~ 31502661 (-)
G145899 NA other downstream 26245 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 284737 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 862009 30644395 ~ 30650306 (-)
G145141 NA other downstream 2568254 28938993 ~ 28944061 (-)
LOC103035326 sall2 other upstream 32544 31550529 ~ 31558461 (-)
cckar cckar,LOC106608554 other upstream 353072 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1582312 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2267110 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2711935 34229920 ~ 34376670 (-)

Expression


Co-expression Network