LOC111194385


Basic Information

Item Value
gene id LOC111194385
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34102759 ~ 34109347 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678442.1
GTTTTGTGTGAGAACTGCTGGATTAAGAacataataaaagaaacaatgagaggtagaaagagaaaaTTTGTGAAACACAGATGCAATGAGAGATCTACAGCACCACCTAATGTAGTAAGTGATCCCAAAAGGAAGAGAAGTGTGTCACCATCCAAGCAAAGGGAGAAAACAGCTCTCACAATGCTGTCATTGTTACCTGAAATGCTCGAGAAGATCCTCTTTAATCTCTCTGCAACGGATGTGGTTTCTTTTGGAGCCACTTGCCGTTATTTTCACGAGCTGAGCCTGAGCCAGGCAGTGTGGAAGAGACTGTACTGGAGGCAATTCATTGGCCCAGCTCTGAACAATAAAGACGTCAATTGGAGGAGGTTCACCATCCTAAAGATGAGCCAGGGCCTTGCCATGCAGCGCCTGAACAAAGGTGTGCGTCCTATTGGATTGCATCAGCAGCATGCCAGGGCTCGGCGGCCAACAGGGGTCCATCTGTTCAACAGTTCCCTGGCATTGGGCTTCCGTAGGGTGGAGGCCATACTTGAACAAACCCTGCTGTGGGACTACAATGGCACTATCTTTGCGCTCATCACCCCCATAGGAAGAGCGCCATGGTCAAGGCCATACAGCTACTCAGTACTGTGCTATCGAGCCATAGATTTTGCTGTGGACCCTCGCTGGAACCACAACCTCCGCCATTACATCTATGTGCTAACGCTGGGAGAGAGCAGTGGCAAACTTCCAGAGTCTGTGGGAAACCCAGGCTCTGTTGGTGACACTGTGGAGGTGTTCGAGTGGGACACCCATGAAAGAGTTTGTTATATTTCTTTCCACTCTACTATATTCTTCACACAGCTCAGACTGAGTGGGTCAGAGAACCGTCGCTTAATCCTGCTGCTGACAGATGATGGAATAGTATATTCAGCGCATTTAAATGAAACTATGTACAGCAGGAGGACCTCCTACACCACGGAGCTGACTCCAAAGACAGTTTCCTGTCAACTGCCAAACCTTCCAGTCAAACAGCTCCACACCAGTTCAAACAGCACTGTGTATATTAAAGCTGACGGCTCAGCTTTTGCAGAAGTGCATTCTCCAGGAGCGCTCCGCCAGCTGTTTGGGACTTATGAAGGTTTTAATCCCATTGGTGCTGAAATGGTTTACCCACTGCGTCTGCCATCCAGGgtgGTGAAATGCTCTCTGGGGCCTAACCACCTCTGTCTGCTGGATAACTGTGGAAGGATCTTCATGCAAGGCTGCAACCACCATGGCCAGTTAGGAACTGGAGACAAGATTGATCGTACCGAGCCCACtctgGTGATCATTCCCATGGCCCCAGTgaatgtgtggtgtgggctGAACCACACACTGGTTCTGCTGGAGGCTGAGTGTGGAGATAAGCAGGTGCACGGCTGTGGCTGTGGATCGCGGGGCCGATTACCAGGCCACTTGGGGGGCAGCTCTGTGTTTGTGAGGCTCAAAGTTCAaGTTCCACGCCACGCCTCATCTCTTTATTCCTCATCAGACTTTCTCTACATTATCTGCTGCCATGACATAACTGAACCCCCTGCACGTTTCTACATACCACCTGAAGTCACAGCTCTGAAGGATGCTgagaaaaaacagaaggaaGAGATTGAGAAACTGCACATGGACCTCACTCAAATGAAGAGATGTGTCAGTACCAAAAGGGGGATCAAGATGCTGCAGAGGGCTGTAAATGAACACATGACAGGCCTAAGTCCTGCCCACAAAGACTTCCTTGACTCAGCACTGTCCATAATCCTGCATGGGGAGAGCAGATCCACAGAGGAGCCAGAGCAGCAGCCTCATGCATAAACAGGACTGTCGAACAGTTTACTCTGTATGACCAGTACCTCTTTATTtcacataaagaataaaggtaCCTAGCAACATAAAA
>XM_022678443.1
GTTTTGTGTGAGAACTGCTGGATTAAGAacataataaaagaaacaatgagaggtagaaagagaaaaTTTGTGAAACACAGATGCAATGAGAGATCTACAGCACCACCTAATGTACCCAAAAGGAAGAGAAGTGTGTCACCATCCAAGCAAAGGGAGAAAACAGCTCTCACAATGCTGTCATTGTTACCTGAAATGCTCGAGAAGATCCTCTTTAATCTCTCTGCAACGGATGTGGTTTCTTTTGGAGCCACTTGCCGTTATTTTCACGAGCTGAGCCTGAGCCAGGCAGTGTGGAAGAGACTGTACTGGAGGCAATTCATTGGCCCAGCTCTGAACAATAAAGACGTCAATTGGAGGAGGTTCACCATCCTAAAGATGAGCCAGGGCCTTGCCATGCAGCGCCTGAACAAAGGTGTGCGTCCTATTGGATTGCATCAGCAGCATGCCAGGGCTCGGCGGCCAACAGGGGTCCATCTGTTCAACAGTTCCCTGGCATTGGGCTTCCGTAGGGTGGAGGCCATACTTGAACAAACCCTGCTGTGGGACTACAATGGCACTATCTTTGCGCTCATCACCCCCATAGGAAGAGCGCCATGGTCAAGGCCATACAGCTACTCAGTACTGTGCTATCGAGCCATAGATTTTGCTGTGGACCCTCGCTGGAACCACAACCTCCGCCATTACATCTATGTGCTAACGCTGGGAGAGAGCAGTGGCAAACTTCCAGAGTCTGTGGGAAACCCAGGCTCTGTTGGTGACACTGTGGAGGTGTTCGAGTGGGACACCCATGAAAGAGTTTGTTATATTTCTTTCCACTCTACTATATTCTTCACACAGCTCAGACTGAGTGGGTCAGAGAACCGTCGCTTAATCCTGCTGCTGACAGATGATGGAATAGTATATTCAGCGCATTTAAATGAAACTATGTACAGCAGGAGGACCTCCTACACCACGGAGCTGACTCCAAAGACAGTTTCCTGTCAACTGCCAAACCTTCCAGTCAAACAGCTCCACACCAGTTCAAACAGCACTGTGTATATTAAAGCTGACGGCTCAGCTTTTGCAGAAGTGCATTCTCCAGGAGCGCTCCGCCAGCTGTTTGGGACTTATGAAGGTTTTAATCCCATTGGTGCTGAAATGGTTTACCCACTGCGTCTGCCATCCAGGgtgGTGAAATGCTCTCTGGGGCCTAACCACCTCTGTCTGCTGGATAACTGTGGAAGGATCTTCATGCAAGGCTGCAACCACCATGGCCAGTTAGGAACTGGAGACAAGATTGATCGTACCGAGCCCACtctgGTGATCATTCCCATGGCCCCAGTgaatgtgtggtgtgggctGAACCACACACTGGTTCTGCTGGAGGCTGAGTGTGGAGATAAGCAGGTGCACGGCTGTGGCTGTGGATCGCGGGGCCGATTACCAGGCCACTTGGGGGGCAGCTCTGTGTTTGTGAGGCTCAAAGTTCAaGTTCCACGCCACGCCTCATCTCTTTATTCCTCATCAGACTTTCTCTACATTATCTGCTGCCATGACATAACTGAACCCCCTGCACGTTTCTACATACCACCTGAAGTCACAGCTCTGAAGGATGCTgagaaaaaacagaaggaaGAGATTGAGAAACTGCACATGGACCTCACTCAAATGAAGAGATGTGTCAGTACCAAAAGGGGGATCAAGATGCTGCAGAGGGCTGTAAATGAACACATGACAGGCCTAAGTCCTGCCCACAAAGACTTCCTTGACTCAGCACTGTCCATAATCCTGCATGGGGAGAGCAGATCCACAGAGGAGCCAGAGCAGCAGCCTCATGCATAAACAGGACTGTCGAACAGTTTACTCTGTATGACCAGTACCTCTTTATTtcacataaagaataaaggtaCCTAGCAACATAAAA

Function

GO: NA

KEGG:

id description
K10304 FBXO24; F-box protein 24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678442.1 True 1912 mRNA 0.49 10 34102759 34109347
XM_022678443.1 False 1903 mRNA 0.49 10 34102759 34109347

Neighbor

gene id symbol gene type direction distance location
paqr9 paqr9 coding downstream 14155 34080254 ~ 34088604 (-)
arap2 NA coding downstream 101139 33833334 ~ 34001620 (-)
trnae-uuc_21 NA coding downstream 2045891 32056797 ~ 32056868 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 2386034 31709203 ~ 31716725 (-)
sh3tc1 sh3tc1 coding downstream 2424213 31656834 ~ 31678546 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 323484 34432831 ~ 34458413 (-)
nwd2 nwd2,LOC107661962 coding upstream 356118 34465465 ~ 34556703 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding upstream 789457 34898804 ~ 34943657 (-)
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding upstream 985903 35095250 ~ 35112113 (-)
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding upstream 1181821 35291168 ~ 35390551 (-)
G146303 NA non-coding downstream 10585 34017778 ~ 34092174 (-)
G146324 pcolce2,LOC108428564 non-coding downstream 24806 34076949 ~ 34077953 (-)
G146321 NA non-coding downstream 37264 34061494 ~ 34065495 (-)
G146254 NA non-coding downstream 279238 33823015 ~ 33823521 (-)
G146253 NA non-coding downstream 279804 33822460 ~ 33822955 (-)
G146331 NA non-coding upstream 42467 34151814 ~ 34153483 (-)
G146338 NA non-coding upstream 70992 34180339 ~ 34187108 (-)
G146390 NA non-coding upstream 108391 34217738 ~ 34222837 (-)
G146395 rwdd4 non-coding upstream 267374 34376721 ~ 34383713 (-)
G146396 NA non-coding upstream 319651 34428998 ~ 34430757 (-)
LOC107197333 NA other downstream 317338 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 997172 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 2217350 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 2544298 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 2600098 31499916 ~ 31502661 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 120573 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 1295551 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 1353850 35463197 ~ 35479194 (-)
G146686 NA other upstream 1774262 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 2189292 36298639 ~ 36338664 (-)

Expression


Co-expression Network