LOC103039994


Basic Information

Item Value
gene id LOC103039994
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34189634 ~ 34191960 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678444.1
TATAAATATTCTACAGTCAGACAAGCAAATcgttttaaaaatttaaatagcgtggaaaaaaataaaataaaatattgaaaatatgcGTTTCTATGGCTACAAAAGTGACGCGGCGCGCGTCCTCCTTCAGCGCGATGATTGGACGGTTGTTTTGTTTACAGAGTTTCTGAACTCGAgacaaacagcagcagaagcagcgtTTACCTGAGGACATCCAGCGATTTTTCAACGACAGACCCTTTTATTCTtgaatatttactgttttattaactctattgtgttttattaccatattattgtgatattatctgttacaaatcttatatattttgtttttcaggtGTTGAAACCGGTGTGGGTATACTGACACCCCGCGGTCAAACATGAGTGAAGATTATCGCCTAGAGGGCACTGAGGAGCTGAGGGCTGCATGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGATGGAGCTCAGGAGGGTTCAGCTCGAGTTCCTTGAGGGGAAGCTGAAGGCCCTCATTCAGAAGgtgGAGTCTCAGTGCGCACAAGACCCCCTCATTCTCCTGCCTTCTTGCGGCACCGAGGAGCCAGACCTCTGGATGAAGCTCAGGAGGGTTCAGCTCAAGTTCCTCGAGGGGAAGCTGAAGGCCCTCAGTGAGAAGCTTTCCTGTCCCAGGCGACATGTTGGTAGAGTCCTGGTGCCGGTTAGGGAGGCAGCCCCCGCCCACAGGCTAGACTCTACCAAGCCTGATATCACAGGTCCAATTGCACAGTGCCAAGAAGCTCCAGACCCAGacctcaccaccaccacctctcaTCCGGAGCCATCCAGCCAGGGGGACACTGCACTGTCACCCACCACTAATACACAGCGCAGATCCCTTAAACGCATTGTCACTCACTTTAGGACCTCCATTGTGTCTCGTTTCAGGTCTCCTAGATTTAACCACAGTTGCTTTACGTACATAGATATAGAGATAGATGTAGGATACACAtagaaacacacatacacactctaataaactcacatatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678444.1 True 1037 mRNA 0.47 6 34189634 34191960

Neighbor

gene id symbol gene type direction distance location
LOC103032728 lrch4,LOC108428567,LOC107661958 coding upstream 19389 34115141 ~ 34170245 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding upstream 127667 34028450 ~ 34061967 (+)
dthd1 NA coding upstream 164261 34012482 ~ 34025373 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding upstream 2187151 31934723 ~ 32002483 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 2329977 31773504 ~ 31859657 (+)
rwdd4 rwdd4 coding downstream 184762 34376722 ~ 34383744 (+)
LOC103032224 LOC107583291 coding downstream 193370 34385330 ~ 34423139 (+)
LOC103039377 pcxb,LOC108428573,LOC108267638,LOC108412801,LOC107661088,LOC107721657,LOC107583287 coding downstream 489338 34681298 ~ 35048688 (+)
LOC103029357 plcb3,LOC108428576,LOC108267602 coding downstream 1004296 35196256 ~ 35273019 (+)
LOC103027680 paip2b,LOC103027680,LOC108428580,LOC108263850 coding downstream 1270751 35462711 ~ 35478752 (+)
G146265 NA non-coding upstream 124125 34029326 ~ 34065509 (+)
G146243 NA non-coding upstream 285345 33882808 ~ 33904289 (+)
G146241 arap2 non-coding upstream 331326 33851013 ~ 33858308 (+)
G146237 NA non-coding upstream 366433 33821431 ~ 33823201 (+)
G146231 NA non-coding upstream 455832 33733540 ~ 33733802 (+)
G146296 NA non-coding downstream 17182 34209142 ~ 34211321 (+)
G146424 NA non-coding downstream 397007 34588967 ~ 34589166 (+)
G146441 NA non-coding downstream 561962 34753922 ~ 34754396 (+)
G146457 ppp1r14b,LOC108268202 non-coding downstream 902401 35094361 ~ 35226268 (+)
G146466 NA non-coding downstream 1018425 35210385 ~ 35274100 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other upstream 111659 34067581 ~ 34077975 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 1085405 32879690 ~ 33104229 (+)
G146104 NA other upstream 1577072 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 2118071 32071314 ~ 32071563 (+)
tbc1d19 tbc1d19,LOC107660707 other upstream 2263084 31892526 ~ 31926550 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 1207818 35399778 ~ 35406330 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 2299552 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 2498733 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 2846975 37038935 ~ 37042227 (+)
G147496 NA other downstream 4422918 38614878 ~ 38615355 (+)

Expression


Co-expression Network