LOC103025974 (ankrd46,LOC108428588)


Basic Information

Item Value
gene id LOC103025974
gene name ankrd46,LOC108428588
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35728712 ~ 35732299 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678449.1
TGCAGGCGGCGGTGTGATACTGTGGTGAAGGAGGGGACACTGCAGAGCCTGTAGCGCTAATGTAAACAACTCTCCTGCGACAGACACACAGTGAAATTACATTTTCTCACCTGAATTGGAGCACTAAAACAGGTACGCTGGAATTTTCGGAGACCCACTCGGACATGTCATATGTCTTCATCAATGATTCGCCGCAGACTAGTGTACCGTTACTGCAGGCCTGCATCGATGGAGATTTGGCATTTGCAAAGCGCCTCTTGGAGACGGGCTGTGACCCCAACATCCGGGATAACCGAGGCCGAACTGGCCTCCACTTAGCAGCTGCTCGTGGCAATGTGGAGATCTGTCGCTTCTTACACAAGTTTGGAGCAGACTTGCTAGCCACTGATTATCAAGGCAACACTGCTCTGCACCTGTGTGGACATGTGGACACTATTCAGTTTCTTGTCTCTAATGGGCTGAAGATAGATATCTGTAATCATAATGGTTCAACTCCTCTGGTGCTGGCCAAGCGACGAGGGGTGAATAAAGATGCTATTCGACTTCTGGAAGGTCTGGAGGAACAGGAGGTGAAAGGCTTCAACAGAGGAGCTCATTCCAAACTAGAGACCATGCAGATGGCTGAGAGTGAGAGCGCCATGGAAAGTCACTCGCTTCTAAACCCCAACCTACAGAACAGTGAGGGCGTGCTGTCCAGCTTCCGCTCCACCTGGCAGGAGTTTGTGGAAGACCTGGGTTTCTGGAGGGTTCTTCTGCTTCTGGTGGTGATCGCTCTACTCTCTCTCGGCATCGCTTACTATGTGAGCGGCGTACTCCCCTTCTCTGCCAGCCAGCTGGAGCTGGTCCACTGATTGTCACACTTGCTTTCAGCAAGtgaagtttaatgtttttttttttttctttttgcattagTTTTTAAGATTCTTTGATCTGTCTGACTGTACTTGTATTATCAATACTACAATACCAAAAGTCAAAGACAGATGCTGCTGTTGTTCTTCATGAagcttttatattgttttagctTAAAAGCATTTAGCTGTTGGGAGCATGGAGTTAAGTATGTACAGAGCTGTGAGATGTGAAGAgggtttgttttcatttttcattttattgtgtaCAGTATTTAATACCCTGCAGAATTCATCTGTAACAAGTACAAATTCAGTCCTGTTTTGTGCACATTGATTGGAGCATGACCAATGAATTCAAATACATTCAAACACTACAGGGCATTTTTACCTTCTGAATGTTAATAAACATGCTTCTAATCAGAAGGGTCAGCCAAGCCTTGCATGAAGGAGAAAAGGCTgtataaactaaatatttaagtGCAATGGTTTCAGTCTCCCATGCACACATGTAAGGTGATGTTACATTtctactttcacttttactaATTACAGTGTGCTTCTACCTCCAAGTACCTTCTACCTTTGATAATGCTGATTCAGCTACagaccaccaccatgttttggTGGTGCAAATATTTTCTCTCTTGAGttgggccttttttttttttaaacattttaa

Function

symbol description
ankrd46 Predicted to be integral component of membrane.

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 46 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678449.1 True 1533 mRNA 0.44 4 35728712 35732299

Neighbor

gene id symbol gene type direction distance location
LOC103027072 t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425 coding downstream 1512 35720786 ~ 35727200 (-)
m1ap m1ap coding downstream 170570 35520728 ~ 35558142 (-)
nagk nagk,LOC107697250 coding downstream 238354 35485919 ~ 35490358 (-)
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding downstream 338161 35291168 ~ 35390551 (-)
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding downstream 616599 35095250 ~ 35112113 (-)
col4a6 col4a6 coding upstream 2873 35735172 ~ 35865931 (-)
LOC103025363 LOC108412586 coding upstream 212056 35944355 ~ 35964411 (-)
LOC103025043 LOC108412585 coding upstream 239044 35971343 ~ 35988863 (-)
LOC103024731 rasl11a,LOC108412587,LOC107596470,LOC107707904,LOC107684967 coding upstream 280481 36012780 ~ 36017524 (-)
LOC103023665 LOC108412584,LOC108267422,LOC107702308,LOC107596505 coding upstream 304709 36037008 ~ 36106859 (-)
G146654 NA non-coding downstream 15399 35709442 ~ 35713313 (-)
G146585 NA non-coding downstream 267882 35459003 ~ 35460830 (-)
G146583 NA non-coding downstream 279219 35449189 ~ 35449493 (-)
G146559 NA non-coding downstream 440303 35269786 ~ 35288409 (-)
G146561 LOC108428576,LOC107721661,LOC107661090,LOC108267602,LOC107583283,LOC107744270 non-coding downstream 467435 35253731 ~ 35261277 (-)
G146665 NA non-coding upstream 461 35732760 ~ 35734303 (-)
G146666 NA non-coding upstream 9032 35741331 ~ 35747114 (-)
G146703 NA non-coding upstream 194544 35926843 ~ 35927528 (-)
G146743 NA non-coding upstream 298840 36031139 ~ 36035502 (-)
G146753 NA non-coding upstream 427457 36159756 ~ 36163324 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other downstream 249518 35463197 ~ 35479194 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other downstream 293005 35404898 ~ 35435707 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 1352042 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 1943291 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 2623125 33100297 ~ 33105587 (-)
G146686 NA other upstream 151310 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 566340 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 933900 36666199 ~ 36706281 (-)
poln poln,haus3 other upstream 1352697 37084996 ~ 37246025 (-)
G147092 NA other upstream 1619779 37352078 ~ 37391735 (-)

Expression


Co-expression Network