LOC107197638


Basic Information

Item Value
gene id LOC107197638
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37829318 ~ 37834005 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678516.1
AGGTCAAATGCAGAGGCTAAATCGTGCAATACTGTTGTGCTGCAATTTCTAGctgaaaactaaaaaagtgtttaaggGAAGAAAGGAAATGGCTGAATCCTCATCACCACAATCAAGACAAGGCAGAAGACACAGTATGGAATATCCAATGAATTttggTCGTGAGTCCAGCAGTCCTCTGTCTGAAGATCAGTTCCAGTGTTCTATTTGTCTGGACGTGTTCACTGATCCAGTTTCTACTCCATGTGGACACAACTTCTGTAAATCCTGCCTCACTCAGTACTGGAACAGCACTCAGCACTGTCACTGTCCTTTATGTAAAGAGAAATTCACCAAGAGACCTGAAATGAAGATCAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAACTGTTCTAGACAAATCTGAGGTTCTCTGTGACGTCTGCACTAGAGAGAAGGCCTTTAAGTCCTGTCTGAATTGTGGAGCGACGTTCTGTAAGACTCATCTGGAGCCACATACAGTTGGGACACTTAGGAATCACAAACTAATTGATCCAGTGGAGAACCTGAAGAACTACATCTGCCAGAAGCACGAGAAACCCCTGGAGCTGTTCTGTAGAGATGATCAGACGTGTGTGTGTCTATTCTGTACTGTAACTGATCACAAGAATCACAATACTGTTCCTATAGAGGAGGAGAGTGGAGTGAAAAAGACACAGATGGGGAAGACACATACAGAGGTGCAGCAGATGATCAAAGACAGACTGAAAAAGATTAAAGAGATTAAACACTCAGTAGACATCAGAAAAagaaacacagagaaggaGATTTCAGACAGTGTTGAAGTCTTCTCTGCTCTGATGCGCTCCATTGAGAGAAGTCAGGCTGAGCtgcttgaggtgatggaggagaaGCAGAAAGCAGCAGAGAGGCAGGCTGAAGAGTTCATTAAAGATCTGGAGCAGGAAATCACTGAGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgagGATCACCTCCACCTCCTACAGATTTACCCATCCCTGTGCAGACCCCCACACACCACCAACTGGACTGATATCAGTGTTGATCCTCATCTGAGTGTAGAGACTGTAAGGAACACTCTGTCTCAACTACAGAAGAGTCTGAATGAAGTACTCAGTGAGAAGCTGAGAGAAACCGatgtaacagaactgaagagGATTCAGCAGTATGCAGTGGACGTGACTCTGGATCCTGATACAGCTCATCCTAATCTCATCCTGTCTAAAGATGGAAAACAAGTGAGATGTGAATACAAAAAACAGAATCTTCCTGACAATCCAGAGAGATTtagtgtatgtgcatgtgtgctgGGAAAGGAGGGATTCTCCTCAGGAAGATTTTACTATGAGGTGCAGGTCAGCGGGAAGAATAAGTGGGATTTAGGAGTGGCTCACGAGTTCATCAAAAGGAAGATTCATATAAAACTGAATCCACAGAATGGATTCTGGACTGTGTGGCTGAGGAATGGGAATGAGTATGAGGCTTGTGCTGGTCCTGgggtccctctctctctgagagAGAAGCTCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAGGACAGGTCTCATATCTACTCTTTCACTGGTCAGTCCTTCACTGAGAAAGTCTATCCATACTTCTGCCCCTGTAATATTGATAGTGGTAAAAACATAGCTCCACTGATCATCTCACCTGTGTGTAAGACTGAATAAATGCAGctaaatttcattttaaattcatttatatGACCAGTAGATGACAGCAAAGTAAAGATAGGTAAATAATAACACTTCCAGTAATGAGTGAATGCTAGTGTTTGAGAGGTGTCCTGTATGCTGAAGTCTTATTTTCTTGCTCTTTTAAGCTTTGTAATAAGCTGTAGCATATAGTTATGTGtgaaattttttaaaatattataatgattaaattattgtttacatttatatttgcatttaaggcatttagcaGATTCCCTTATCTAgagtcacttaaaaaaaatgcttatttttaCTCCAAATGTATCTTTGGAAGCTAGAATCAAGGCCGATGGCAATTAAGGCAATTACTTTAGAGGGAGACATATTGGACTTATACTATTAAAGCTATGGAATTTACTGTtttgaataaatatattcttgTTTACCTTatttatcaaaaaatatatctttttaattgttcattattaatatatttctttttttaattttttttgtcttgttatgattttctcattctctttcttgtCTTTATGTCCAATAGGGGGCAAAtacatgtgtatgtatatgtgtatgctTTCTGGTGGCTTGTACTGAGATTTTGTACAATTTTGTACCCTGATTAAGGCCCGAGTGGGCCACAATGTGTTGGCACATTTTAAGTCACTCTGCCATGTGTGAATAGCCCAGGAGTTTCTTTGCACTGTAATAAACACCAATATATACTGGTATACAGTGTTGGGCAGTTGGATTTTAGAGCTCTTAACCCTCTCTCCTCCAGGGATGACCAAGGGGACATGCAACAATGTTGTCAGCCGGGACATGCAACAATTTGTGGGTAGTGGTATCAGATTAGAGTGGTGGTTCTGGGTAGTTAATGACAGGGTTTGAGTTTGCTAAGCTGCCACTGAACAAGGACATTCAGTAAGGCCTCTCTGCACCCCAGGGTGTCGCCTTAAAGACTGCCCACCACCCCTTTGTGTTCAACACAGTGATGGTGGTTGTCTTGTCtgtattatgatatttttaaatgattgtcTGTTGTTGTAGTTTGTCTCATAATTAagagcattttaaaatacattaaaaa

Function

GO: NA

KEGG:

id description
K12009 TRIM27, RFP; tripartite motif-containing protein 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678516.1 True 2861 mRNA 0.41 7 37829318 37834005

Neighbor

gene id symbol gene type direction distance location
LOC111194218 NA coding downstream 4668 37823208 ~ 37824650 (-)
LOC103022155 LOC103022155 coding downstream 7385 37816286 ~ 37821933 (-)
LOC103022872 NA coding downstream 21023 37800904 ~ 37808295 (-)
LOC103023489 LOC103023489 coding downstream 34041 37789105 ~ 37795277 (-)
LOC103023814 LOC108440030 coding downstream 41498 37770817 ~ 37787820 (-)
LOC103047381 NA coding upstream 53678 37887683 ~ 37898901 (-)
LOC103046269 NA coding upstream 110834 37944839 ~ 37969078 (-)
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding upstream 153442 37987447 ~ 37996482 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding upstream 181577 38015582 ~ 38027404 (-)
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding upstream 319817 38153822 ~ 38296144 (-)
G147359 NA non-coding downstream 16973 37811598 ~ 37812345 (-)
G147311 NA non-coding downstream 221433 37596154 ~ 37607885 (-)
G147320 NA non-coding downstream 226396 37584618 ~ 37602922 (-)
G147321 NA non-coding downstream 227921 37584263 ~ 37601397 (-)
G147314 NA non-coding downstream 264116 37562807 ~ 37565202 (-)
G147386 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288 non-coding upstream 169474 38003479 ~ 38009023 (-)
G147390 NA non-coding upstream 188050 38022055 ~ 38022505 (-)
G147397 NA non-coding upstream 207447 38041452 ~ 38041671 (-)
G147407 NA non-coding upstream 259507 38093512 ~ 38122985 (-)
G147405 NA non-coding upstream 291649 38125654 ~ 38213359 (-)
mrpl52 mrpl52 other downstream 102509 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 314866 37508661 ~ 37514452 (-)
G147092 NA other downstream 437583 37352078 ~ 37391735 (-)
poln poln,haus3 other downstream 583293 37084996 ~ 37246025 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other downstream 1123037 36666199 ~ 36706281 (-)
LOC111194363 LOC108267931 other upstream 6877 37840882 ~ 37858571 (-)
LOC103047699 NA other upstream 70887 37904892 ~ 37910873 (-)
LOC103040134 NA other upstream 1172981 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 1179997 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 1195993 39029998 ~ 39250697 (-)

Expression


Co-expression Network