LOC103047381



Basic Information


Item Value
gene id LOC103047381
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37887683 ~ 37898901 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022678517.1
ACTTTGCAGACGGTCCCTTAACAGCTTCAGCGCCCGCTACAGCGATTCCTGCaattttcagtaaatattctcggagaaacagaaagACCTTTAACTTCTGGATTTTTAGCAACTGAGAGGAGATTAAACACAACAACACTAcaggaaaaaaagaggaataaaGTTATTAGGgttaaaaaggaagaaagaaatggCAGAATCTTCACCACAACCAAGACAAGGCAGAAGACAGAGTATGGATGAACCAGCCTCGTTTGGTCGTGGATCCAGCAGTCCTCTGTCTGAAGATCAGTTCCACTGTTCTATCTGTCTGGACGTGTTCACTGATCCAGTTTCTACTCCATGTGGACACAACTTCTGTATAACCTGCCTCTCTCAGTACTGGAACAGCACTCAGCACTTTCACTGTCCTTTATGTAAAGAGGAATTCACCAAGAGACCAGAACTGAAGATCAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAACGTGTTCTAGATAAACCTGAGGTTCTCTGTGATGTCTGCACTGAAGAGAAGCTGAAGGCCTTCAAGTCCTGTCTAAATTGTGGAGCAACATTCTGTAAGACACATCTGGAGCCACACTCAGGTGGGAAACTCAAGAATCACAAGCTAATTCATCCAGTGGAGAACCTGGAGGATTACATCTGCCAGAAGCATGAAAGACCCCTGGAGCTGTTCTGTAGAGATGATCAGACAGGTGTGTGTCAGTTCTGCACTGAAACTGACCACAAGAATCACAATACTGTTCCTATAGAGGAGGAGAGTGGAGAGAAAAAGACACAGCTGGGGGAGACACAGACTGAGGTGCAGCAGATGATCCAAGACAGACTGATGGAAATTAAAGAGATCAAACACTCAGTAGACATCAGAAAAagaaacacagagaaggaGATTTCAGACAGTGTTGAGGTCTTCACTGCTCTGATACGCTCCATTGAGAGAAGTCAGGCTGAGCtgcttgaggtgatggaggagaaGCAGAAAGCAGCAGAGAGGCAGGCTGAAGATCTCATTAAAGATCTGGAGCAGGAAATCACTGAGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgagGATCACCTCCACCTCCTACAGATTTACCCATCCCTGTGCAGACCCCCACACACCACCAACTGGACTGATATCAGTGTTGATCCTCATCTGAGTGTAGAGACTGTGAGGAACGCTCTGTCTCAACTTCAGAAGAGTCTGAATGAAGAACTCACTAAAATGATTAATGAGAAGATCAAAGAATCAGTTTCATCAGAGCTAAAGAGGATCCAGCAGTATGCAGtggaCGTGACTCTGGATCCTGATACAGCTCATCCTTATCTCATCCTGTCTAAAGATGGAAAACAAGTGAAACATGGAGACACAAAACAGAATCTTCCTGACAATCCAGAGAGATTCACATATTATTACAATGTTCTGGGAAAGGAGGGATTCTCCTCAGGGAGATTTTACTATGAGGTGCAGGTCAGCGGGAAGACTGACTGGGATTTTGGAGTGGTCAGAGAGTCTATTAACAGAAAGGGGGAGATTATACTGACCCCACAGGACGGATTCTGGGCTGTGGTTCTGAGGAATGGGAATCAGTATAAGGCTTGTGCTGATCCTccagtctccctctctctgagaGAGAAGCTCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAGGCCAGGTCTCATATCTACTCTTTCACTGGTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGCCCTTTTCTTAACAATGGAGATAAAaattcagctccactgatcatcaCACCGGTGTGTAaaatttaatacagtttaagCTCAAACCAGTGTTTATCAGATGTTTGAaaagaaaaggtatttaataGATAAACATACTGTTTATAGGCCTAATCTCACTATTGCTTAATATGGGCTGTGTATAGAGTCCTGTTGGAATCCTTTATTAAAGTTtgaataatttctaaacaaacagaGCTCAGCATATATTCCCTGAATATATTTTGggaaattaaaaactaaaagtacTTCATTATTCTGCAGTAAATTGTAATCATGTGTTATTATATTACAAATtgtcagcaatcaactataccATATACAAACCACTTATAGGTGATGAGAATTACAATGATAATCTGGTTTCAGTGGCACCTGTAAAAGAACGGCTTTATTAGGAAAGCCGGGGAACAGTCAGGTCTTGAACTTGATGTGCTGGAAACAGAAAATATGGACAAGTGTAAAATTCAAAGACACTCGGACTACAACTAATCTGTGATATCTAGACGACTAGAtcaaaacatctccaaaacatcaggcaggtcttgtgaCTGAAAATTGTTTCTTAGAGCACAAAAGTGCTCATCAGCACCTATACAGCTCCTTGCTGTAATCCATGGAGGacccacctcacaacttacagtgCTTTAGGGATCTGCTGCTAATGTTCTGCTGCTGATACAACAAGATACCTTTTAGAGGTCTTGTAGAGTTTGTGCCTGTACAGATTAGAGCTGTATTAGAGGTAGCAGGTAGTTTAAAAGCAATGGCTGATTTATGTGAAACAATTTTCAGTTATAAGATTTGAGCTTATCATATCAagcagaacaaaaacaaaaaaaataatgtggtgTGCATGTGATGTCTGTTTTTATTCATGATAGCAAATATTCAGTGATATTAATGATTATTCacatatttaattaaacacatgCACTGTTACTGTGTTTACTCTAGTAATCTGTCAGaattgtaaaagtgtaaaattgaGTTTTAAAAGCAGATTAAAATGCTTTCTCTGGTTCTATAAGTGAACTAATAAAGAAATGTCTCCTGAGA

Function


GO: NA

KEGG:

id description
K12015 TRIM39; tripartite motif-containing protein 39

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022678517.1 True 2911 mRNA 0.41 9 37887683 37898901

Neighbor


gene id symbol gene type direction distance location
LOC107197638 NA coding downstream 53678 37829318 ~ 37834005 (-)
LOC111194218 NA coding downstream 63033 37823208 ~ 37824650 (-)
LOC103022155 LOC103022155 coding downstream 65750 37816286 ~ 37821933 (-)
LOC103022872 NA coding downstream 79388 37800904 ~ 37808295 (-)
LOC103023489 LOC103023489 coding downstream 92406 37789105 ~ 37795277 (-)
LOC103046269 NA coding upstream 45938 37944839 ~ 37969078 (-)
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding upstream 88546 37987447 ~ 37996482 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding upstream 116681 38015582 ~ 38027404 (-)
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding upstream 254921 38153822 ~ 38296144 (-)
LOC103028652 zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726 coding upstream 453837 38352738 ~ 38403259 (-)
G147359 NA non-coding downstream 75338 37811598 ~ 37812345 (-)
G147311 NA non-coding downstream 279798 37596154 ~ 37607885 (-)
G147320 NA non-coding downstream 284761 37584618 ~ 37602922 (-)
G147321 NA non-coding downstream 286286 37584263 ~ 37601397 (-)
G147314 NA non-coding downstream 322481 37562807 ~ 37565202 (-)
G147386 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288 non-coding upstream 104578 38003479 ~ 38009023 (-)
G147390 NA non-coding upstream 123154 38022055 ~ 38022505 (-)
G147397 NA non-coding upstream 142551 38041452 ~ 38041671 (-)
G147407 NA non-coding upstream 194611 38093512 ~ 38122985 (-)
G147405 NA non-coding upstream 226753 38125654 ~ 38213359 (-)
LOC111194363 LOC108267931 other downstream 29112 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 160874 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 373231 37508661 ~ 37514452 (-)
G147092 NA other downstream 495948 37352078 ~ 37391735 (-)
poln poln,haus3 other downstream 641658 37084996 ~ 37246025 (-)
LOC103047699 NA other upstream 5991 37904892 ~ 37910873 (-)
LOC103040134 NA other upstream 1108085 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 1115101 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 1131097 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 1142692 39041593 ~ 39061059 (-)

Expression



Co-expression Network