LOC103028652 (zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726)


Basic Information

Item Value
gene id LOC103028652
gene name zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38352738 ~ 38403259 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678537.1
CAGAAGAGCCTCGGccgaagctgctgctgctgctgccagggAACCACATACATAACCTAACCCAgctattatacacacacacacattcacacacaggcTAGAGTAGCTGCGAGCATCAGTGCGAGGTTCACACAAATTAAACACAACCTCAGACCTTCTCTGGAGTCTTCACCAGAGCCGGGGAAGCGATGTAAAGCCTAAAACAGAGGACGAGAATAGAaagaggagacagagagagagacagcggaGGAACCGCTAACCGCGCCTGCTGCTCCTGCTCAGtAGTCAGCCATGCCGCTGGTAAAGAGGAGTATAGAGCCCAGGCACCTGTGCAGGGGGGCGCTGCCCGATGGAGTCACCAGTGAGCTTGAGTGCGTCACCAACAGCACCCTAGCCGCCATCATCAAACAGCTCGGCAGCCTCAgtcgTCATGCGGAGGACATCTTTGGAGAGCTGTTTAAAGAAGCCAACAGCTTCTACCTGAGGATGAACCACCTCCAGGAGCGTGTGGACCTGCTGGCTGTTAAAGTGACCCAGCTGGACTCCACTGTGGAGGAGGTTTCTCTGCAGGACATCAACATGAGGAAGGCGTTCAAAAGCTCCACCACTCAGGATCAGCAGGTGGTGTCTCGAGCCTCCATTCCCAACCCTGTGATGGAGATTTACCATCATGGAGACAAGCCCCCTCCACTTAATATTCTGTCCCCTTACAGaGATGACAAGAAGGATGCGCTGAAGTTTTACACAGACCCCTCCTACTTCTTCAATCTGTGGAAAGAGAAAATGCTGCAAGCCACAGAGGACaagaggaaagagaagagacgacagaagACAAGCGCTCCAGCCCAGGCTCACATGGCCCAGTCTAAGTCCAGGCAGGTCCATCCCAGAAGCCCCCTCTGCTCTGCTgagcagcagaagcaggtGGAGGACCCAAGTCGGGAGGTTAAGAAGGTCCGGAAGGCTCGGAATCGCAGGCAGGAGTGGAACGTTTTGGCATATGATAAAGAGTTCCGCCCCGATGCCAGATTCACGCCGTCTCCGTACCACGGCATGTCCTCGGAGGGTTCACTATCACCCGACAGCAGGTCAGTGGCGTCAGACATGGGGGATCACTCGTATCCAGGCAGCCCGAGCCGCCCGGCTCAGCAGACGGCTCCCACCAGTGCTTACTCCAGCAGCGAGGGTAAAGAGCTCCTCCTGGCCCCGACACAGGGTCAGACTCCGAGCCTGGAGCAGGGCTACCGGCCCTCAGCCGCACATTCCACTCCAGCGGGCAGACAGACACTGTCCAGGGGTCAGACAGTACACGGCCCCACAACCACAGACCCGGCCCTCAACGGACCTCGCCCAGCACAGGCCAAAGACTACAgtggtCAACAAGCCCAGCACCCAGAGTACTTCATCCCCCCTGCccctcctccaccccctcccctCATCCCTTCGGCTCAGACAGCTTTCGACAGCCCGTCAGCCCCCTCACTGCCCCCCAGTGCCGTGGCTTCACTATCCCGCTCCTACAGCCCCTCACCTCCCACCCCTGCCCTGCCAGCTTCATATACTCCTTCCCCGGCTCACCCACCACCTGCAGCCCCGCCACCACCCCCACCGGGGCCCCCCACACACCCGCACCCACACGCACATTCTCACGCACACGCCCAGCCCCAGGCACCGGCCGAAGCAGCGGCCCCCAGGAAGGGGCAGGTACCCATGATCCCCATGAGCGATGCCCGCAGCGACCTGCTCGCCGCTATCCGACGAGGTATACAGTTGAGGAAAGTGCAGGAGCAGAGAGAGCTGGAGGCTAAAAAGGAGCCTGTGGGCAATGATGTGGCCACCATCCTGTCCCGCCGCATCGCTGTAGAGTACAGCGAATCAGACGAGGACTCCGAGCTGGACGAGAACGAGTGGTCTGACTGAAGCAGAGGAGAGAGCGGGACGGACCAGCAGAGCAGAgaacaaaagaagaagagaaactaaagagagagagagaggacgagAGGAGAGGTTTTCAGGACAGCGTAATAGATGTAGCAGATGAAAGCTATGAACTATATATAACCATGGTGTGTACAGTCCATCACCTGTCATTCAGAGAGTTATGGAACTTCCATAatgttttcagtattttaaagaTGAAGTACTGTAAGAAGGTGTATAGTTATCTAATGCTGGTGTTCAGCAGATTGCCAGGTTTTCAGGAGACGCACACAAGTCGGCACAAACTAACAAATAAGAGACACACACAAGGAGTGATAATAATTATCTTAGAACTCGTCAATCAGTTACGTTTCACACAATTTCACAAATTTCGCAACTC
>XM_022678538.1
CAGAAGAGCCTCGGccgaagctgctgctgctgctgccagggAACCACATACATAACCTAACCCAgctattatacacacacacacattcacacacaggcTAGAGTAGCTGCGAGCATCAGTGCGAGGTTCACACAAATTAAACACAACCTCAGACCTTCTCTGGAGTCTTCACCAGAGCCGGGGAAGCGATGTAAAGCCTAAAACAGAGGACGAGAATAGAaagaggagacagagagagagacagcggaGGAACCGCTAACCGCGCCTGCTGCTCCTGCTCAGTCAGCCATGCCGCTGGTAAAGAGGAGTATAGAGCCCAGGCACCTGTGCAGGGGGGCGCTGCCCGATGGAGTCACCAGTGAGCTTGAGTGCGTCACCAACAGCACCCTAGCCGCCATCATCAAACAGCTCGGCAGCCTCAgtcgTCATGCGGAGGACATCTTTGGAGAGCTGTTTAAAGAAGCCAACAGCTTCTACCTGAGGATGAACCACCTCCAGGAGCGTGTGGACCTGCTGGCTGTTAAAGTGACCCAGCTGGACTCCACTGTGGAGGAGGTTTCTCTGCAGGACATCAACATGAGGAAGGCGTTCAAAAGCTCCACCACTCAGGATCAGCAGGTGGTGTCTCGAGCCTCCATTCCCAACCCTGTGATGGAGATTTACCATCATGGAGACAAGCCCCCTCCACTTAATATTCTGTCCCCTTACAGaGATGACAAGAAGGATGCGCTGAAGTTTTACACAGACCCCTCCTACTTCTTCAATCTGTGGAAAGAGAAAATGCTGCAAGCCACAGAGGACaagaggaaagagaagagacgacagaagACAAGCGCTCCAGCCCAGGCTCACATGGCCCAGTCTAAGTCCAGGCAGGTCCATCCCAGAAGCCCCCTCTGCTCTGCTgagcagcagaagcaggtGGAGGACCCAAGTCGGGAGGTTAAGAAGGTCCGGAAGGCTCGGAATCGCAGGCAGGAGTGGAACGTTTTGGCATATGATAAAGAGTTCCGCCCCGATGCCAGATTCACGCCGTCTCCGTACCACGGCATGTCCTCGGAGGGTTCACTATCACCCGACAGCAGGTCAGTGGCGTCAGACATGGGGGATCACTCGTATCCAGGCAGCCCGAGCCGCCCGGCTCAGCAGACGGCTCCCACCAGTGCTTACTCCAGCAGCGAGGGTAAAGAGCTCCTCCTGGCCCCGACACAGGGTCAGACTCCGAGCCTGGAGCAGGGCTACCGGCCCTCAGCCGCACATTCCACTCCAGCGGGCAGACAGACACTGTCCAGGGGTCAGACAGTACACGGCCCCACAACCACAGACCCGGCCCTCAACGGACCTCGCCCAGCACAGGCCAAAGACTACAgtggtCAACAAGCCCAGCACCCAGAGTACTTCATCCCCCCTGCccctcctccaccccctcccctCATCCCTTCGGCTCAGACAGCTTTCGACAGCCCGTCAGCCCCCTCACTGCCCCCCAGTGCCGTGGCTTCACTATCCCGCTCCTACAGCCCCTCACCTCCCACCCCTGCCCTGCCAGCTTCATATACTCCTTCCCCGGCTCACCCACCACCTGCAGCCCCGCCACCACCCCCACCGGGGCCCCCCACACACCCGCACCCACACGCACATTCTCACGCACACGCCCAGCCCCAGGCACCGGCCGAAGCAGCGGCCCCCAGGAAGGGGCAGGTACCCATGATCCCCATGAGCGATGCCCGCAGCGACCTGCTCGCCGCTATCCGACGAGGTATACAGTTGAGGAAAGTGCAGGAGCAGAGAGAGCTGGAGGCTAAAAAGGAGCCTGTGGGCAATGATGTGGCCACCATCCTGTCCCGCCGCATCGCTGTAGAGTACAGCGAATCAGACGAGGACTCCGAGCTGGACGAGAACGAGTGGTCTGACTGAAGCAGAGGAGAGAGCGGGACGGACCAGCAGAGCAGAgaacaaaagaagaagagaaactaaagagagagagagaggacgagAGGAGAGGTTTTCAGGACAGCGTAATAGATGTAGCAGATGAAAGCTATGAACTATATATAACCATGGTGTGTACAGTCCATCACCTGTCATTCAGAGAGTTATGGAACTTCCATAatgttttcagtattttaaagaTGAAGTACTGTAAGAAGGTGTATAGTTATCTAATGCTGGTGTTCAGCAGATTGCCAGGTTTTCAGGAGACGCACACAAGTCGGCACAAACTAACAAATAAGAGACACACACAAGGAGTGATAATAATTATCTTAGAACTCGTCAATCAGTTACGTTTCACACAATTTCACAAATTTCGCAACTC
>XM_022678539.1
GACTGTCTGAGAAAGAAGGCTACATGATTGCCGCAATGTATGATTGGAATGTATGAAgagcttctctctctttctgtatgcgtgtgtgtataaatgtgtgagtgtgtgtttgtgcgtatGTATGCATCCGTCCATCTCTCCATTTTACTCACATCCGCAGCTTTTGCAGGGTGGGTTTTTCCTTGGTGTCGTTTCCATGGCGACACCCTTCTTGtAGTCAGCCATGCCGCTGGTAAAGAGGAGTATAGAGCCCAGGCACCTGTGCAGGGGGGCGCTGCCCGATGGAGTCACCAGTGAGCTTGAGTGCGTCACCAACAGCACCCTAGCCGCCATCATCAAACAGCTCGGCAGCCTCAgtcgTCATGCGGAGGACATCTTTGGAGAGCTGTTTAAAGAAGCCAACAGCTTCTACCTGAGGATGAACCACCTCCAGGAGCGTGTGGACCTGCTGGCTGTTAAAGTGACCCAGCTGGACTCCACTGTGGAGGAGGTTTCTCTGCAGGACATCAACATGAGGAAGGCGTTCAAAAGCTCCACCACTCAGGATCAGCAGGTGGTGTCTCGAGCCTCCATTCCCAACCCTGTGATGGAGATTTACCATCATGGAGACAAGCCCCCTCCACTTAATATTCTGTCCCCTTACAGaGATGACAAGAAGGATGCGCTGAAGTTTTACACAGACCCCTCCTACTTCTTCAATCTGTGGAAAGAGAAAATGCTGCAAGCCACAGAGGACaagaggaaagagaagagacgacagaagACAAGCGCTCCAGCCCAGGCTCACATGGCCCAGTCTAAGTCCAGGCAGGTCCATCCCAGAAGCCCCCTCTGCTCTGCTgagcagcagaagcaggtGGAGGACCCAAGTCGGGAGGTTAAGAAGGTCCGGAAGGCTCGGAATCGCAGGCAGGAGTGGAACGTTTTGGCATATGATAAAGAGTTCCGCCCCGATGCCAGATTCACGCCGTCTCCGTACCACGGCATGTCCTCGGAGGGTTCACTATCACCCGACAGCAGGTCAGTGGCGTCAGACATGGGGGATCACTCGTATCCAGGCAGCCCGAGCCGCCCGGCTCAGCAGACGGCTCCCACCAGTGCTTACTCCAGCAGCGAGGGTAAAGAGCTCCTCCTGGCCCCGACACAGGGTCAGACTCCGAGCCTGGAGCAGGGCTACCGGCCCTCAGCCGCACATTCCACTCCAGCGGGCAGACAGACACTGTCCAGGGGTCAGACAGTACACGGCCCCACAACCACAGACCCGGCCCTCAACGGACCTCGCCCAGCACAGGCCAAAGACTACAgtggtCAACAAGCCCAGCACCCAGAGTACTTCATCCCCCCTGCccctcctccaccccctcccctCATCCCTTCGGCTCAGACAGCTTTCGACAGCCCGTCAGCCCCCTCACTGCCCCCCAGTGCCGTGGCTTCACTATCCCGCTCCTACAGCCCCTCACCTCCCACCCCTGCCCTGCCAGCTTCATATACTCCTTCCCCGGCTCACCCACCACCTGCAGCCCCGCCACCACCCCCACCGGGGCCCCCCACACACCCGCACCCACACGCACATTCTCACGCACACGCCCAGCCCCAGGCACCGGCCGAAGCAGCGGCCCCCAGGAAGGGGCAGGTACCCATGATCCCCATGAGCGATGCCCGCAGCGACCTGCTCGCCGCTATCCGACGAGGTATACAGTTGAGGAAAGTGCAGGAGCAGAGAGAGCTGGAGGCTAAAAAGGAGCCTGTGGGCAATGATGTGGCCACCATCCTGTCCCGCCGCATCGCTGTAGAGTACAGCGAATCAGACGAGGACTCCGAGCTGGACGAGAACGAGTGGTCTGACTGAAGCAGAGGAGAGAGCGGGACGGACCAGCAGAGCAGAgaacaaaagaagaagagaaactaaagagagagagagaggacgagAGGAGAGGTTTTCAGGACAGCGTAATAGATGTAGCAGATGAAAGCTATGAACTATATATAACCATGGTGTGTACAGTCCATCACCTGTCATTCAGAGAGTTATGGAACTTCCATAatgttttcagtattttaaagaTGAAGTACTGTAAGAAGGTGTATAGTTATCTAATGCTGGTGTTCAGCAGATTGCCAGGTTTTCAGGAGACGCACACAAGTCGGCACAAACTAACAAATAAGAGACACACACAAGGAGTGATAATAATTATCTTAGAACTCGTCAATCAGTTACGTTTCACACAATTTCACAAATTTCGCAACTC
>XM_022678540.1
CAGAAGAGCCTCGGccgaagctgctgctgctgctgccagggAACCACATACATAACCTAACCCAgctattatacacacacacacattcacacacaggcTAGAGTAGCTGCGAGCATCAGTGCGAGGTTCACACAAATTAAACACAACCTCAGACCTTCTCTGGAGTCTTCACCAGAGCCGGGGAAGCGATGTAAAGCCTAAAACAGAGGACGAGAATAGAaagaggagacagagagagagacagcggaGGAACCGCTAACCGCGCCTGCTGCTCCTGCTCAGtAGTCAGCCATGCCGCTGGTAAAGAGGAGTATAGAGCCCAGGCACCTGTGCAGGGGGGCGCTGCCCGATGGAGTCACCAGTGAGCTTGAGTGCGTCACCAACAGCACCCTAGCCGCCATCATCAAACAGCTCGGCAGCCTCAgtcgTCATGCGGAGGACATCTTTGGAGAGCTGTTTAAAGAAGCCAACAGCTTCTACCTGAGGATGAACCACCTCCAGGAGCGTGTGGACCTGCTGGCTGTTAAAGTGACCCAGCTGGACTCCACTGTGGAGGAGGTTTCTCTGCAGGACATCAACATGAGGAAGGCGTTCAAAAGCTCCACCACTCAGGATCAGCAGGTGGTGTCTCGAGCCTCCATTCCCAACCCTGTGATGGAGATTTACCATCATGGAGACAAGCCCCCTCCACTTAATATTCTGTCCCCTTACAGaGATGACAAGAAGGATGCGCTGAAGTTTTACACAGACCCCTCCTACTTCTTCAATCTGTGGAAAGAGAAAATGCTGCAAGCCACAGAGGACaagaggaaagagaagagacgacagaaggagcagcagaagcaggtGGAGGACCCAAGTCGGGAGGTTAAGAAGGTCCGGAAGGCTCGGAATCGCAGGCAGGAGTGGAACGTTTTGGCATATGATAAAGAGTTCCGCCCCGATGCCAGATTCACGCCGTCTCCGTACCACGGCATGTCCTCGGAGGGTTCACTATCACCCGACAGCAGGTCAGTGGCGTCAGACATGGGGGATCACTCGTATCCAGGCAGCCCGAGCCGCCCGGCTCAGCAGACGGCTCCCACCAGTGCTTACTCCAGCAGCGAGGGTAAAGAGCTCCTCCTGGCCCCGACACAGGGTCAGACTCCGAGCCTGGAGCAGGGCTACCGGCCCTCAGCCGCACATTCCACTCCAGCGGGCAGACAGACACTGTCCAGGGGTCAGACAGTACACGGCCCCACAACCACAGACCCGGCCCTCAACGGACCTCGCCCAGCACAGGCCAAAGACTACAgtggtCAACAAGCCCAGCACCCAGAGTACTTCATCCCCCCTGCccctcctccaccccctcccctCATCCCTTCGGCTCAGACAGCTTTCGACAGCCCGTCAGCCCCCTCACTGCCCCCCAGTGCCGTGGCTTCACTATCCCGCTCCTACAGCCCCTCACCTCCCACCCCTGCCCTGCCAGCTTCATATACTCCTTCCCCGGCTCACCCACCACCTGCAGCCCCGCCACCACCCCCACCGGGGCCCCCCACACACCCGCACCCACACGCACATTCTCACGCACACGCCCAGCCCCAGGCACCGGCCGAAGCAGCGGCCCCCAGGAAGGGGCAGGTACCCATGATCCCCATGAGCGATGCCCGCAGCGACCTGCTCGCCGCTATCCGACGAGGTATACAGTTGAGGAAAGTGCAGGAGCAGAGAGAGCTGGAGGCTAAAAAGGAGCCTGTGGGCAATGATGTGGCCACCATCCTGTCCCGCCGCATCGCTGTAGAGTACAGCGAATCAGACGAGGACTCCGAGCTGGACGAGAACGAGTGGTCTGACTGAAGCAGAGGAGAGAGCGGGACGGACCAGCAGAGCAGAgaacaaaagaagaagagaaactaaagagagagagagaggacgagAGGAGAGGTTTTCAGGACAGCGTAATAGATGTAGCAGATGAAAGCTATGAACTATATATAACCATGGTGTGTACAGTCCATCACCTGTCATTCAGAGAGTTATGGAACTTCCATAatgttttcagtattttaaagaTGAAGTACTGTAAGAAGGTGTATAGTTATCTAATGCTGGTGTTCAGCAGATTGCCAGGTTTTCAGGAGACGCACACAAGTCGGCACAAACTAACAAATAAGAGACACACACAAGGAGTGATAATAATTATCTTAGAACTCGTCAATCAGTTACGTTTCACACAATTTCACAAATTTCGCAACTC

Function

symbol description
zgc:109889 Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Predicted to be active in lamellipodium. Is expressed in central nervous system; lens; and solid lens vesicle.

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein family member 3-like isoform X1

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K06083 WASF3; WAS protein family, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678537.1 True 2320 mRNA 0.56 10 38352738 38403259
XM_022678538.1 False 2317 mRNA 0.56 10 38352738 38403259
XM_022678539.1 False 2252 mRNA 0.55 10 38352738 38385182
XM_022678540.1 False 2242 mRNA 0.56 9 38352738 38403259

Neighbor

gene id symbol gene type direction distance location
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding downstream 56594 38153822 ~ 38296144 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding downstream 325334 38015582 ~ 38027404 (-)
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding downstream 356256 37987447 ~ 37996482 (-)
LOC103046269 NA coding downstream 383660 37944839 ~ 37969078 (-)
LOC103047381 NA coding downstream 453837 37887683 ~ 37898901 (-)
LOC103044140 LOC108434824,LOC108267122,LOC107691957 coding upstream 5585 38408844 ~ 38609892 (-)
LOC103043213 LOC108410408,LOC108267136 coding upstream 425418 38828677 ~ 38845998 (-)
LOC103041964 clcn5,LOC108434858,LOC108267828,LOC106563682,LOC108279192 coding upstream 524267 38927526 ~ 38961503 (-)
LOC103042589 pygmb,LOC108434859,LOC108267457,LOC107753953,LOC107742296,LOC107562665,LOC107701539 coding upstream 560479 38963738 ~ 38983217 (-)
sf1 sf1,LOC107753954,LOC107659718,LOC107562691,LOC107588130,LOC107691964 coding upstream 582753 38986012 ~ 38997741 (-)
G147427 NA non-coding downstream 124760 38227511 ~ 38227978 (-)
G147405 NA non-coding downstream 139379 38125654 ~ 38213359 (-)
G147407 NA non-coding downstream 229753 38093512 ~ 38122985 (-)
G147397 NA non-coding downstream 311067 38041452 ~ 38041671 (-)
G147390 NA non-coding downstream 330233 38022055 ~ 38022505 (-)
G147500 NA non-coding upstream 213544 38616803 ~ 38617057 (-)
G147503 NA non-coding upstream 214892 38618151 ~ 38618698 (-)
G147506 NA non-coding upstream 225141 38628400 ~ 38629110 (-)
G147514 NA non-coding upstream 236049 38639308 ~ 38681678 (-)
LOC111194220 NA non-coding upstream 344559 38747818 ~ 38751357 (-)
LOC103047699 NA other downstream 441865 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 494167 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 625929 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 838286 37508661 ~ 37514452 (-)
G147092 NA other downstream 961003 37352078 ~ 37391735 (-)
LOC103040134 NA other upstream 603727 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 610743 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 626739 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 638334 39041593 ~ 39061059 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other upstream 696839 39100098 ~ 39104914 (-)

Expression


Co-expression Network