LOC103044140 (LOC108434824,LOC108267122,LOC107691957)


Basic Information

Item Value
gene id LOC103044140
gene name LOC108434824,LOC108267122,LOC107691957
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38408844 ~ 38609892 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678541.1
ctctgctctgcgcTCTGCTCTGCGCTGCGCTGAGCACATCACGGAGTCTCGCGCACCGGACGCGTTTGAGCGCTGTGGAGGAATCCGAGAGGTGGGACGACAACAgaacacaaagacagaggacAGAAAGAGCACGCGCAGGTGATCAGACCATGTGAGGAGGGTCTGGAGGCGCGCGAGAACAGCCACAGCAGCGAGACAGACCACCGGTCCTAATGGacTGTTGGAGGAAACGGGAGCCGCCTGAGGAAACCCACACGGACATGAtgtggagaacatggaaactccacccagatagagacttgaacccaagaccccggTGCTGAGAGATATTTCCTCCAATACCTCCAAGACTGCAAGGACAAGAGCACCAAATGGACACAATGGATATCCTCTATTCTGTAGACTTTACCTTCACATAGCATAACCAGTGGATCATTCAAAACACAGGAGCCCTACCAGGACTTTGAAGCACCCATTCACCCATTGTTGGTAAGGGTGAGCCCGCTAGTGGCCTGCAGAAAGAACTGTAGCTACTCTAATGATGGGGGCTCCTGGAGGACCGGTTCTGGGTGGCTTTGGGTCCACCACTGCCTCGTTAGACATCGCTGGATGGATGATCTCACCTGGAAACACAACCATAAGCCTGAACCAGAGCCTGTCCTCGCTCGATCTAGCTGCCAACATCTCCGCTTCCTCAGCATCCACTCAGGCTGAAGACAAGGACAAGATAGAAAAGAATTGGCCAGCGCTGCTCATACTGGTGATTATCCTGCTGACCATAGGAGGGAACATTCTGGTCATCCTGGCCGTGTCCCTGGAAAAGAAGCTGCAGAACGCAACAAACTTCTTTCTGCGATCTCTGGCCGTGGCGGACATGTTGGTTGGCATCCTGGTTATGCCCATCTCCCTCATCAACATCCTGTACGACTATGCCTGGCCTCTGCCTAATGCCCTGTGTCCAATCTGGATCTACCTGGACGTGCTCTTCTCCACAGCCTCCATCATGCACCTGTGCGCCATCTCTCTGGACCGATACGTGGCCATCTGCAATCCCATCCAGCACAGCCGCTTCAACTCACGCACCAAAGCCATGCTGAAAATCGCCGCTGTCTGGACCATCTCTATAGgcATCTCCATGCCCATCCCGGTGATCGGCCTTAGCAACGAGGATAAAGTCTTTGTGAACCACAGTTGTGTTCTGAATGAGGAGCGCTTCGTGCTTGTTGGCTCCTTTGTGGCCTTCTTCATCCCTCTGGTCATCATGGTGGTCACCTACTGCCTCACGGTGCAGGCCCTCCAACGCCAGGCGTCCGTCTTCCTCTATGAGACCAAGGCATCTTCCCAGCAGCCCTTGCAGCCCACAGGCCCATCCTCTTCCCAGCTGGCTCCTCCCCTTGCCCCATCGCGCCGCAGCAGCCTGAACTGCCTTCGTCTGGGGGGAGGGGACGGAAACTCTTTGAGCCCCGCCACGCTTTCGGACAGCGTCTCGATCGTGGGCAGTTCGGAAGCCCCGTCTCAGCTTAACTCACCTGTGGGTCGAGACCCCACCGGGGCCCACGGCCGCCGTGGCATGATGCAGGCCATCAAGAATGAGCGGCGGGCCTCTAAAGTCCTGGGTGTGGTGTTCTTTCTGTTCTTGCTTATGTGGTGCCCGTTCTTCATCACCAATGTGCTGTTTGTGCTGTGCCGCGGGGCATGCAATGAACCCCTGCTGAATGAACTGCTCAATGTATTCGTGTGGATTGGATATATCTCCTCAGGGGTCAACCCTCTGGTTTACACACTTTTTAATAAGACCTACAGACGGGCTTTCTCCAGCTACATGCGCTGCCGGTACGGCGGAGTGCGGCTCAAACCCATTCCCATCTATTCCCAGCCCTGCCCCTCCCATGCTGCAGTTACTCCCCTCCTAATCTGTGGGAAGGTGGGAGTGGACCGGAACAGTAACTGCCGGAATGGGGACGGGAATGGCTTTGGGAATCTGGAGGCTACGGACATAGACATGGATGCTGGGTTGGAACTACGACCTGGAATGTCAGCGTTGTCCGTCAACAGCTGCCACGCACTTCCAGAACACACAAGCAGCGTTTGAATGGCTTCAAACCCATGAATCTGGAGCAGGGTCCTCCAGTTTAGCCCTTAGGACTTTGGACTTGTGTTTTGCCAATTCCCTCGGGGTGTGTCTGCATCCTTCTTGTTGCATCACTCAAACAAGGAACTGCCCACAACCCTTGGGAACTCACACCAGCATTGGGATTGGCTTTCGTCACTACCACTAGGTGTGACACGGTCTTTCTAGAATGTACGCTGGTAGGCACCGACTCAAAGCACCACAGACTAACCCTGGTTCGAATGCGTCAGAGCACTTCCAGGACGCTCAGCACTGTGCAGGAATGAATAAGGAGTACAAAATATACAAGCCAGTTTTCTGGACATGGATTAGGCCTAGTCTCAGACTGAAATGTAACATCAGTGGTTGAGTAGATGTTCTTGATTAGCAATTTCAGTCTCAGCTTAAGCCTAATTTTGGTCTGAGAAACTGGTGCTACATGTGAAATCAACAAGTACACATTTCTTAAtggaactgtgtgtgtgaacaggttCAGATATCTGAAATgccaaataatttattgtgttgcaTGGCTTATTCCGGTTTCCCAGTTACACCTAGTCAAACAGTGCGACCTGCTGAACATGCAGGAAGGCTTCCAATCAGAGAGTATACAGTGCCCTCATGTGGTCCATTGCAGAAGTCTGGTTGCAGGTGGCTTGTGAGATGAAGAGCTAAAAAAAAGGTGGCTGACCTACattatatgaagaaaaaaaaaaaaaatatata
>XM_022678542.1
TAAGCGCACTAATCAGCAGTCTGGCAGCGAACACGAGGAACACGCTGCCCAGTTCCTCCCAGTTCCACCCAGTTGTCCCAGTCCTCCCTGTTCATCACTGCGCGCTAAAGGGGCTTTTTTGGAGACGCTCGGGATGTATCTCTACCTCGCGCTCATGAAACGTGGGGACTAGACTGCAGCTGTTCCCTGGactctattgtttttttttattattatcctgtTTCTCCGCGCGCGAGGAGCAATCGGACACCTTCCTCCCAGCGCGCGCCACTGTCATTAATTACGCGGCACCAATTACGCGCGAGTCTGATTAACGGAGCCGCGCTGCCTCGGTAAACAGCGCATCTGCAGTGAGacTGTTGGAGGAAACGGGAGCCGCCTGAGGAAACCCACACGGACATGAtgtggagaacatggaaactccacccagatagagacttgaacccaagaccccggTGCTGAGAGATATTTCCTCCAATACCTCCAAGACTGCAAGGACAAGAGCACCAAATGGACACAATGGATATCCTCTATTCTGTAGACTTTACCTTCACATAGCATAACCAGTGGATCATTCAAAACACAGGAGCCCTACCAGGACTTTGAAGCACCCATTCACCCATTGTTGGTAAGGGTGAGCCCGCTAGTGGCCTGCAGAAAGAACTGTAGCTACTCTAATGATGGGGGCTCCTGGAGGACCGGTTCTGGGTGGCTTTGGGTCCACCACTGCCTCGTTAGACATCGCTGGATGGATGATCTCACCTGGAAACACAACCATAAGCCTGAACCAGAGCCTGTCCTCGCTCGATCTAGCTGCCAACATCTCCGCTTCCTCAGCATCCACTCAGGCTGAAGACAAGGACAAGATAGAAAAGAATTGGCCAGCGCTGCTCATACTGGTGATTATCCTGCTGACCATAGGAGGGAACATTCTGGTCATCCTGGCCGTGTCCCTGGAAAAGAAGCTGCAGAACGCAACAAACTTCTTTCTGCGATCTCTGGCCGTGGCGGACATGTTGGTTGGCATCCTGGTTATGCCCATCTCCCTCATCAACATCCTGTACGACTATGCCTGGCCTCTGCCTAATGCCCTGTGTCCAATCTGGATCTACCTGGACGTGCTCTTCTCCACAGCCTCCATCATGCACCTGTGCGCCATCTCTCTGGACCGATACGTGGCCATCTGCAATCCCATCCAGCACAGCCGCTTCAACTCACGCACCAAAGCCATGCTGAAAATCGCCGCTGTCTGGACCATCTCTATAGgcATCTCCATGCCCATCCCGGTGATCGGCCTTAGCAACGAGGATAAAGTCTTTGTGAACCACAGTTGTGTTCTGAATGAGGAGCGCTTCGTGCTTGTTGGCTCCTTTGTGGCCTTCTTCATCCCTCTGGTCATCATGGTGGTCACCTACTGCCTCACGGTGCAGGCCCTCCAACGCCAGGCGTCCGTCTTCCTCTATGAGACCAAGGCATCTTCCCAGCAGCCCTTGCAGCCCACAGGCCCATCCTCTTCCCAGCTGGCTCCTCCCCTTGCCCCATCGCGCCGCAGCAGCCTGAACTGCCTTCGTCTGGGGGGAGGGGACGGAAACTCTTTGAGCCCCGCCACGCTTTCGGACAGCGTCTCGATCGTGGGCAGTTCGGAAGCCCCGTCTCAGCTTAACTCACCTGTGGGTCGAGACCCCACCGGGGCCCACGGCCGCCGTGGCATGATGCAGGCCATCAAGAATGAGCGGCGGGCCTCTAAAGTCCTGGGTGTGGTGTTCTTTCTGTTCTTGCTTATGTGGTGCCCGTTCTTCATCACCAATGTGCTGTTTGTGCTGTGCCGCGGGGCATGCAATGAACCCCTGCTGAATGAACTGCTCAATGTATTCGTGTGGATTGGATATATCTCCTCAGGGGTCAACCCTCTGGTTTACACACTTTTTAATAAGACCTACAGACGGGCTTTCTCCAGCTACATGCGCTGCCGGTACGGCGGAGTGCGGCTCAAACCCATTCCCATCTATTCCCAGCCCTGCCCCTCCCATGCTGCAGTTACTCCCCTCCTAATCTGTGGGAAGGTGGGAGTGGACCGGAACAGTAACTGCCGGAATGGGGACGGGAATGGCTTTGGGAATCTGGAGGCTACGGACATAGACATGGATGCTGGGTTGGAACTACGACCTGGAATGTCAGCGTTGTCCGTCAACAGCTGCCACGCACTTCCAGAACACACAAGCAGCGTTTGAATGGCTTCAAACCCATGAATCTGGAGCAGGGTCCTCCAGTTTAGCCCTTAGGACTTTGGACTTGTGTTTTGCCAATTCCCTCGGGGTGTGTCTGCATCCTTCTTGTTGCATCACTCAAACAAGGAACTGCCCACAACCCTTGGGAACTCACACCAGCATTGGGATTGGCTTTCGTCACTACCACTAGGTGTGACACGGTCTTTCTAGAATGTACGCTGGTAGGCACCGACTCAAAGCACCACAGACTAACCCTGGTTCGAATGCGTCAGAGCACTTCCAGGACGCTCAGCACTGTGCAGGAATGAATAAGGAGTACAAAATATACAAGCCAGTTTTCTGGACATGGATTAGGCCTAGTCTCAGACTGAAATGTAACATCAGTGGTTGAGTAGATGTTCTTGATTAGCAATTTCAGTCTCAGCTTAAGCCTAATTTTGGTCTGAGAAACTGGTGCTACATGTGAAATCAACAAGTACACATTTCTTAAtggaactgtgtgtgtgaacaggttCAGATATCTGAAATgccaaataatttattgtgttgcaTGGCTTATTCCGGTTTCCCAGTTACACCTAGTCAAACAGTGCGACCTGCTGAACATGCAGGAAGGCTTCCAATCAGAGAGTATACAGTGCCCTCATGTGGTCCATTGCAGAAGTCTGGTTGCAGGTGGCTTGTGAGATGAAGAGCTAAAAAAAAGGTGGCTGACCTACattatatgaagaaaaaaaaaaaaaatatata

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 2C-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007626 locomotory behavior biological_process
GO:0007631 feeding behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04157 HTR2; 5-hydroxytryptamine receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678541.1 False 2842 mRNA 0.53 5 38408844 38609892
XM_022678542.1 True 2978 mRNA 0.52 5 38408844 38609432

Neighbor

gene id symbol gene type direction distance location
LOC103028652 zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726 coding downstream 5585 38352738 ~ 38403259 (-)
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding downstream 112700 38153822 ~ 38296144 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding downstream 381440 38015582 ~ 38027404 (-)
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding downstream 412362 37987447 ~ 37996482 (-)
LOC103046269 NA coding downstream 439766 37944839 ~ 37969078 (-)
LOC103043213 LOC108410408,LOC108267136 coding upstream 218785 38828677 ~ 38845998 (-)
LOC103041964 clcn5,LOC108434858,LOC108267828,LOC106563682,LOC108279192 coding upstream 317634 38927526 ~ 38961503 (-)
LOC103042589 pygmb,LOC108434859,LOC108267457,LOC107753953,LOC107742296,LOC107562665,LOC107701539 coding upstream 353846 38963738 ~ 38983217 (-)
sf1 sf1,LOC107753954,LOC107659718,LOC107562691,LOC107588130,LOC107691964 coding upstream 376120 38986012 ~ 38997741 (-)
LOC103040853 LOC108434861 coding upstream 390203 39000095 ~ 39006229 (-)
G147478 NA non-coding downstream 11980 38396155 ~ 38396864 (-)
G147427 NA non-coding downstream 180866 38227511 ~ 38227978 (-)
G147405 NA non-coding downstream 195485 38125654 ~ 38213359 (-)
G147407 NA non-coding downstream 285859 38093512 ~ 38122985 (-)
G147397 NA non-coding downstream 367173 38041452 ~ 38041671 (-)
G147500 NA non-coding upstream 6911 38616803 ~ 38617057 (-)
G147503 NA non-coding upstream 8259 38618151 ~ 38618698 (-)
G147506 NA non-coding upstream 18508 38628400 ~ 38629110 (-)
G147514 NA non-coding upstream 29416 38639308 ~ 38681678 (-)
LOC111194220 NA non-coding upstream 137926 38747818 ~ 38751357 (-)
LOC103047699 NA other downstream 497971 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 550273 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 682035 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 894392 37508661 ~ 37514452 (-)
G147092 NA other downstream 1017109 37352078 ~ 37391735 (-)
LOC103040134 NA other upstream 397094 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 404110 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 420106 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 431701 39041593 ~ 39061059 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other upstream 490206 39100098 ~ 39104914 (-)

Expression


Co-expression Network