LOC107197333


Basic Information

Item Value
gene id LOC107197333
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 33785095 ~ 33785421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_001518498.2
CAGTGAAGCAAGCATGGTTGTACCTGCCGAATAATCCTGTTCCATCTACCATCTGCTCAAGCTCTTTTCAAGCATCGTTGTTTTACCTTTTCTCAACTTGCTACATTAAACAAGTAAACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_001518498.2 True 121 ncRNA 0.40 2 33785095 33785421

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_21 NA coding downstream 1728227 32056797 ~ 32056868 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 2068370 31709203 ~ 31716725 (-)
sh3tc1 sh3tc1 coding downstream 2106549 31656834 ~ 31678546 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 2129986 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 2190708 31592291 ~ 31594387 (-)
arap2 NA coding upstream 47913 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 294833 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 317338 34102759 ~ 34109347 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 647410 34432831 ~ 34458413 (-)
nwd2 nwd2,LOC107661962 coding upstream 680044 34465465 ~ 34556703 (-)
G146232 NA non-coding downstream 51292 33733539 ~ 33733803 (-)
G146229 NA non-coding downstream 75316 33707655 ~ 33709779 (-)
G146219 NA non-coding downstream 123287 33661473 ~ 33661808 (-)
G146209 NA non-coding downstream 198704 33585920 ~ 33586391 (-)
G146198 NA non-coding downstream 451431 33333345 ~ 33333664 (-)
G146253 NA non-coding upstream 37039 33822460 ~ 33822955 (-)
G146254 NA non-coding upstream 37594 33823015 ~ 33823521 (-)
G146303 NA non-coding upstream 232357 34017778 ~ 34092174 (-)
G146321 NA non-coding upstream 276073 34061494 ~ 34065495 (-)
G146324 pcolce2,LOC108428564 non-coding upstream 291528 34076949 ~ 34077953 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 679508 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 1899686 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 2226634 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 2282434 31499916 ~ 31502661 (-)
G145899 NA other downstream 2299025 31483943 ~ 31486070 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 444499 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 1619477 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 1677776 35463197 ~ 35479194 (-)
G146686 NA other upstream 2098188 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 2513218 36298639 ~ 36338664 (-)

Expression


Co-expression Network