LOC111194176


Basic Information

Item Value
gene id LOC111194176
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23172948 ~ 23174800 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650967.1
TGATATAGTAATTGTAAGCTCatgttgtgttttgttgctTTCTGTTTTACAGCATCCAACACATGTCCAGGCCACTCCTGACCCTTCACGGTTTGGCCAGTGTGGTGTTTTCAAATGCCCCTGCTTCAGTTTTGACACTGACCAGCGATTTAATAACAGCCTACATCTACAAAACCATATCAAACAAGCAGTCGAGAATAACGGAAAGTTCAGCGTGTTGAACGTGTGACTGATGAAGGAGATAGAATGGGCAACGTCTCCTTTGAACAGTTCTGGAAGAGGGTGACAAAGCTTTTTTAAAGCTGTCACTGGTTTGTCGTCTCTTCCGGGACATTGTTTGGACAACAATCATTCCGGGCCTGGGCACATTTCGAGTGGCTTGACAGTGTAGTGCCATGAAAACATCACAGTGCTGCATGTAAAGACGAGTTTCGCAGGATGTACGAACTGCAGTGCTGCCAGAACTGTCAAGAAACTTATAAAGACTGCATACTGGGCTACGTTGGGCATGGGAGACGAGGGGAGCTTGTGGCATTTTACAGCGAAAACGAGCACCCTGGATTCTGCAGCCAGCTTCatgagtggctgggtgtgtgagtggctgggtgtgtgagtggctgggtgtgtgagtggctgggtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650967.1 True 642 lncRNA 0.48 5 23172948 23174800

Neighbor

gene id symbol gene type direction distance location
trnaa-cgc_2 NA coding upstream 107590 23065287 ~ 23065358 (+)
trnat-cgu NA coding upstream 107849 23065028 ~ 23065099 (+)
adcyap1 adcyap1 coding upstream 150536 23016781 ~ 23022412 (+)
LOC103031382 NA coding upstream 168954 22991462 ~ 23003994 (+)
tyms tyms coding upstream 233689 22934665 ~ 22939259 (+)
smchd1 smchd1 coding downstream 15664 23190464 ~ 23250746 (+)
emilin2 NA coding downstream 80877 23255677 ~ 23290625 (+)
LOC103023765 NA coding downstream 260794 23435594 ~ 23442090 (+)
LOC103024399 pde5a,pde5ab coding downstream 398003 23572803 ~ 23664047 (+)
LOC103024717 LOC108436153,LOC108267195,LOC107730122,LOC559800,LOC107698664,LOC107559837 coding downstream 535708 23710508 ~ 23734928 (+)
LOC111194177 NA non-coding upstream 589 23170450 ~ 23172359 (+)
LOC111194182 NA non-coding upstream 8533 23162876 ~ 23164415 (+)
G143675 NA non-coding upstream 38808 23130286 ~ 23134140 (+)
G143674 NA non-coding upstream 57690 23115037 ~ 23115258 (+)
G143642 NA non-coding upstream 103073 23068374 ~ 23069875 (+)
LOC111194181 NA non-coding downstream 6917 23181717 ~ 23185264 (+)
G143694 NA non-coding downstream 12228 23187028 ~ 23189236 (+)
G143684 NA non-coding downstream 116512 23291312 ~ 23291924 (+)
G143698 NA non-coding downstream 118192 23292992 ~ 23293214 (+)
G143699 NA non-coding downstream 119266 23294066 ~ 23294388 (+)
G143324 NA other upstream 562501 22535685 ~ 22610447 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 1264634 21811291 ~ 21908314 (+)
G143122 LOC108436138 other upstream 1526243 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 1561266 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 1593224 21569082 ~ 21579724 (+)
LOC111194251 NA other downstream 210368 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 228888 23403688 ~ 23406894 (+)
G143836 NA other downstream 653148 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 1261579 24436379 ~ 24602402 (+)
G144017 NA other downstream 1532283 24707083 ~ 24711533 (+)

Expression


Co-expression Network