LOC111194182


Basic Information

Item Value
gene id LOC111194182
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23162876 ~ 23164415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650974.1
attcaggtcgaaaaaattcaggttataaaaattcaggttgtaaaaattcaggtaaaaaaaattcaggtcGAAAAATTTCAGGGAAACATCCGGGGTACACAGAATGACCAATCAAGCGCAGAGCTAATCGAGCTCACAGCGGCCAATCACAACACAGCTCTGAAGCCTGTGGGAGCTGCGTCTTTTTTCACCTGTGGAGAAGCTCCGTGGCAGCTGCTTGGAGAACACAGCTCCTACAGTCATTTGTCTGATGTTTGCAGACTCTGGGGAAACCACTCCACATCATGCTTTGGAAGCTGCTTTGCCTCCTAAATGGGTACAAACgaagtttaaaacattttgttgcCAATAAATGACAGTATCTATTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650974.1 True 370 lncRNA 0.43 2 23162876 23164415

Neighbor

gene id symbol gene type direction distance location
trnaa-cgc_2 NA coding upstream 97518 23065287 ~ 23065358 (+)
trnat-cgu NA coding upstream 97777 23065028 ~ 23065099 (+)
adcyap1 adcyap1 coding upstream 140464 23016781 ~ 23022412 (+)
LOC103031382 NA coding upstream 158882 22991462 ~ 23003994 (+)
tyms tyms coding upstream 223617 22934665 ~ 22939259 (+)
smchd1 smchd1 coding downstream 26049 23190464 ~ 23250746 (+)
emilin2 NA coding downstream 91262 23255677 ~ 23290625 (+)
LOC103023765 NA coding downstream 271179 23435594 ~ 23442090 (+)
LOC103024399 pde5a,pde5ab coding downstream 408388 23572803 ~ 23664047 (+)
LOC103024717 LOC108436153,LOC108267195,LOC107730122,LOC559800,LOC107698664,LOC107559837 coding downstream 546093 23710508 ~ 23734928 (+)
G143675 NA non-coding upstream 28736 23130286 ~ 23134140 (+)
G143674 NA non-coding upstream 47618 23115037 ~ 23115258 (+)
G143642 NA non-coding upstream 93001 23068374 ~ 23069875 (+)
G143627 NA non-coding upstream 202656 22958268 ~ 22960220 (+)
G143626 NA non-coding upstream 204665 22956811 ~ 22958211 (+)
LOC111194177 NA non-coding downstream 6035 23170450 ~ 23172359 (+)
G143691 NA non-coding downstream 6181 23170596 ~ 23173788 (+)
LOC111194176 NA non-coding downstream 8533 23172948 ~ 23174800 (+)
LOC111194181 NA non-coding downstream 17302 23181717 ~ 23185264 (+)
G143694 NA non-coding downstream 22613 23187028 ~ 23189236 (+)
G143324 NA other upstream 552429 22535685 ~ 22610447 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 1254562 21811291 ~ 21908314 (+)
G143122 LOC108436138 other upstream 1516171 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 1551194 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 1583152 21569082 ~ 21579724 (+)
LOC111194251 NA other downstream 220753 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 239273 23403688 ~ 23406894 (+)
G143836 NA other downstream 663533 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 1271964 24436379 ~ 24602402 (+)
G144017 NA other downstream 1542668 24707083 ~ 24711533 (+)

Expression


Co-expression Network