LOC111194204


Basic Information

Item Value
gene id LOC111194204
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18061017 ~ 18062315 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650988.1
gatgagcaatcgattcagtcttcaatcgagccaacaaccagccaatcacatcacgctccgaagatcacgtgacaggtaGCGCCTCACGGCTCAGAGCCGCTCAACGCGAGTCACAGCCCCCTCCGCTGCTCCTCTGGAGTaggttgaaaagaagatggagaagtTTTAGCTTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACTACTTGAAGAttttatgcagaattatttagaTTATGAATAGGAACCACATTATTTGCaacagcttttattatttatacaaacaagATGAACATGATATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaaaaaaaatacagaacacatgtaaacaacttgttctttaaaagtttggagaaaggaaacctgtGGAATACAAAAGAAACTTGAAAAATTACTGCATTTGATACATggatataattaaacattttaagaacatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650988.1 True 516 lncRNA 0.38 2 18061017 18062315

Neighbor

gene id symbol gene type direction distance location
LOC111194332 NA coding upstream 756926 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1056213 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 1120649 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 2561512 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 2584802 15443821 ~ 15476215 (+)
LOC103034870 NA coding downstream 691492 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 732588 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 759103 18821418 ~ 18826143 (+)
LOC111188235 NA coding downstream 868564 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 907571 18969886 ~ 18987441 (+)
G142228 ss18 non-coding upstream 23433 18035788 ~ 18037584 (+)
G142220 NA non-coding upstream 36345 18022246 ~ 18024672 (+)
G142222 NA non-coding upstream 59841 17997174 ~ 18001176 (+)
G142168 NA non-coding upstream 852835 17206459 ~ 17208182 (+)
G142119 NA non-coding upstream 915943 17144642 ~ 17145074 (+)
G142283 NA non-coding downstream 86581 18148896 ~ 18149113 (+)
G142298 NA non-coding downstream 102002 18164317 ~ 18166497 (+)
G142299 NA non-coding downstream 104233 18166548 ~ 18166852 (+)
G142307 -,cdh2,LOC107746014,LOC107571545,LOC108416271 non-coding downstream 253478 18315793 ~ 18317906 (+)
G142317 cdh2,LOC108267314 non-coding downstream 278718 18341033 ~ 18344605 (+)
G142166 LOC108436878 other upstream 856524 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 987533 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1075722 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1093067 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 2659113 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 793921 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 803135 18865450 ~ 18870317 (+)
G142620 NA other downstream 1673991 19736306 ~ 19868292 (+)
rnf138 NA other downstream 2140333 20202648 ~ 20220149 (+)
G142820 NA other downstream 2720268 20782583 ~ 20790122 (+)

Expression


Co-expression Network