LOC111194210


Basic Information

Item Value
gene id LOC111194210
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 27252358 ~ 27255652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650993.1
AAAGATAAGAAATGGGCAGAAGTGGAATGGAAGCCACAAACTATTGATCACACTGTTCAAAAAGACACACACAGCTGTGGAGTTTTTGTTATGGAGATGGCCAAGCAGCTCATAAACTTCTACCCTCGCTTACCATCTCACATTGTAGTTGATGAGAGAATTGATCAGCTCAGAAGGACAATGGCATCCGAAATTATATCTGCTTCAGAGGATCTTGTAAATGCTTGTCAGTGGTGCGCAGCATATACAAGCCGAAACAAAGATGTCTTTTGGGTAAGAACACCTATAGTGGCACATATTGTACAGCAATGTTGGGTCATGTACAATCTAATATTAACAATAGCTCATCATGTGATTTTATGATATACAGATATGTTGCAGTACATGTGAGCGATGGAACCACATAACTTGCGTAGCCATGTCAAAGGATGAATTTAATGAGTATGAGGGAAAAGATcggaattattattgtccagcATGTGCTGAAAGCTCCAAACTGCCAATAAATGAAGACATATAAAAGATGACCTCTGAAAAAGGACTAAATGACCAAAGAGAAGTACAATGATGTCagtattattttgttataaagTGTTGTGTTACATTTGTTTATTGATTTGTTAATCTAACACTTGTTTATCTATCACTTGTCATTAAAATAGTGTGTATAATTACTGTTCAAATGTACTGTCTAAATGaatattttctataaataaGTGTGACACTACCAGGATAATTATCACAATTTAACAGCAACAACAGCACAGAACGGGGAATCTGACCCCTACCGACCGACCAGCGCTCTCAAGGTTCTGAACACTCCAGCAGTTGGGGACAGGCCAAACCGCTGCGGAGCCAAGAAACCGCACACAAGCCCAGATGCACCTCACTCTAAAAACTAGCCATAAATGAAAGATTTAAATTTTTGACTCCACATGCTGCCTGAACATTTCTTCCCCTTGTGCTCAATCTCTGCCTTTCCTCTCACAGCTGACTAAACCCAAGGAGCTTGCCTGCTTGCTGGACACCCGCACCAAGCAGTGAAATTCACCATTAAGCCATTCCACTGGATCCTTGTCGAGTTTAAACCCCTTGTAACAGATTGAAGTCTCCTACGGGGTTGGAGTTTATATCTTACCCAAAGAAATCTTATTAGTGACCCCAACTGCCCCCTCCCACTCCCCATCATTATATACCTACATGCATGCATAGAAAGTTTCTATTAGCAATATGCCAGCTGCCAATGTATTAGAAGTACTGTATATTCTCTAACTCAGTAAATGCTGTTCTCATGTTCATATGTATGTAGCATGGTATGTCGTCGTAACTTATACTGACCATGCACTGTGAGTACATACTCCACTTTCCTGGAtgctacattttttaatgtgtgctgtatttattgtagtgttttattttcttttttgctaaataattccacattTGCACATTGTCTATATTGTTCTTTGTTTCACTGTGGTTCTAGAAGGaatgttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650993.1 True 1498 lncRNA 0.39 4 27252358 27255652

Neighbor

gene id symbol gene type direction distance location
LOC111194356 NA coding upstream 1235 27248351 ~ 27251123 (+)
ndufs2 ndufs2 coding upstream 136514 27100824 ~ 27115844 (+)
focad focad,LOC101469292,LOC104964325 coding upstream 217279 26935083 ~ 27035079 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding upstream 645167 26602015 ~ 26607191 (+)
etnppl etnppl coding upstream 784538 26448792 ~ 26467820 (+)
LOC111194351 NA coding downstream 46214 27301866 ~ 27305675 (+)
adgra3 adgra3,LOC107691845 coding downstream 775105 28030757 ~ 28084025 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding downstream 1043844 28299496 ~ 28368962 (+)
LOC103035875 LOC108437090 coding downstream 1155661 28411313 ~ 28445089 (+)
LOC103035569 NA coding downstream 1202252 28457904 ~ 28475027 (+)
G144617 NA non-coding upstream 435031 26817035 ~ 26817327 (+)
G144611 NA non-coding upstream 450337 26798916 ~ 26802021 (+)
G144608 trmt10a non-coding upstream 466594 26783243 ~ 26785764 (+)
G144573 NA non-coding upstream 531201 26720432 ~ 26721157 (+)
G144553 NA non-coding upstream 643674 26608211 ~ 26608684 (+)
G144686 NA non-coding downstream 6598 27262250 ~ 27263283 (+)
G144684 NA non-coding downstream 41793 27297445 ~ 27300088 (+)
LOC111194352 NA non-coding downstream 180161 27435813 ~ 27438301 (+)
G144782 NA non-coding downstream 181424 27437076 ~ 27439508 (+)
LOC111194353 NA non-coding downstream 182754 27438406 ~ 27440052 (+)
G144671 NA other upstream 43767 27206742 ~ 27208591 (+)
G144613 NA other upstream 440231 26807716 ~ 26812127 (+)
G144584 NA other upstream 497916 26750835 ~ 26754442 (+)
G144372 NA other upstream 1463516 25786737 ~ 25788842 (+)
G144333 NA other upstream 1598108 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 1370392 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 1900073 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 2173373 29429025 ~ 29432026 (+)
G145438 NA other downstream 2922552 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 3073806 30329458 ~ 30331665 (+)

Expression


Co-expression Network