LOC111194334


Basic Information

Item Value
gene id LOC111194334
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19230169 ~ 19282116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651029.1
TTCACTGCGGTCAGATCCACTGTCTCCTCCAACCAGACTGAGAGACTGGAGCAAAGAAGAAGACGTGCATGAGCGacaaaagaggaggaggaggaggtcaAGTAGTGATGTGTCCACAGTGATGTGCTGCTTCAAAAGGGGAGGAGTCAGAATACAGgtCAGCACTGTGTAATGAAGCAGTGGGAGTTGGCGAGGTCGAGGCTGAGAGCCAAGGAGAAGGAGAGAGCGCTTCACTCATTAAGATAAGACGGGTGTAAACGCCATTCATCAGCCTACAGCCCACTACTGCCATCCACTCCCAACAACAATACTCCACAAATCACCACGCTAATCAACCGCGGTGCCAGCAGGTTCCAGCACCACTGCCTCACAGAAAGCCGACTCTGCACATTCTGCAGACACTGGTCTACAGGGAGGAAATAGGGAGGAAATTGTGCAGAAAGTATAAAAGTCAggctctcttattctctctctctctttctctctctccctctctctttctctagctcTCTCCCAGTGCCACTTTCTACAAGCTGGAAGATTAAACGCTTTGGCTGCGTTTTTAATTGTTCTGGACTCTTAGCGAGAAATCacttcacttttttattattaacgaTTCTGTGCAAATTTAATTAAAGTCCCATCTCAGAAATATGGCTGTCGGTTCTGCAGGAAGACTTATGTAGAAGGTAAAACGCAGTGAAATACAAGCCGGAGGGCAAACCGCACGTTTTATCTGGATTTGACGTGTGTCGCAGGGCCAGCGTGGAGAACACGCTCTGTGGTTTTATAACACTTGGCTCTTTCTGAAGGACACTGGAAGGTGAAGGAAGAGAAGTGAATGGATTTATTACATCCTGGTTCATAACCCCTTTTAGCCCCCTTAAGACTGAGGTGGAAGAGGCTTTGCGATCTTGTTTTGTCGTGCTTTTATCTCAATAGTTGCCATGAGCTTTTTGCTTACCAGAATTGCTTACAGAATTGCTTACAGTACcgtgccattaaaaaaaaaaaagagtttgccCTCCCGTCCGAATTCTTGAAACTGTAGATATTTTACTGGAtgccaaaaactttttttaacttgtCTATCGTTGCATGATTAAGTGCATGATTAAGTGATATCATACTCTTAATCCATAGAATTTAATATGATATTGGCCCTTGCTTTGTAGCTATAACAGCTTCAATTCTACTTTAatgagccactaaaccctaaaccatattttttttccattaccagttaaaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651029.1 True 1251 lncRNA 0.44 3 19230169 19282116

Neighbor

gene id symbol gene type direction distance location
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 110639 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 242728 18969886 ~ 18987441 (+)
LOC111188235 NA coding upstream 298024 18930879 ~ 18932145 (+)
exosc4 exosc4,exos4 coding upstream 404026 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 413772 18794903 ~ 18816397 (+)
LOC111194335 NA coding downstream 143878 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 806180 20088296 ~ 20115213 (+)
mep1b LOC108439312 coding downstream 941660 20223776 ~ 20245141 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 1274650 20556766 ~ 20574038 (+)
LOC111194337 adcy1 coding downstream 1329379 20611495 ~ 20667477 (+)
G142434 NA non-coding upstream 11122 19213366 ~ 19219047 (+)
G142432 NA non-coding upstream 59373 19170527 ~ 19170796 (+)
G142416 NA non-coding upstream 108567 19120252 ~ 19121602 (+)
G142401 NA non-coding upstream 235932 18991189 ~ 18994237 (+)
G142397 NA non-coding upstream 273107 18951214 ~ 18957062 (+)
G142450 NA non-coding downstream 131516 19413632 ~ 19417683 (+)
G142453 NA non-coding downstream 137544 19419660 ~ 19422462 (+)
G142455 NA non-coding downstream 149315 19431431 ~ 19432138 (+)
G142458 NA non-coding downstream 150558 19432674 ~ 19433057 (+)
G142603 NA non-coding downstream 239561 19521677 ~ 19521888 (+)
G142378 gpaa1 other upstream 336660 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 359852 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 2025676 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 2156685 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 2244874 16972202 ~ 16985295 (+)
G142620 NA other downstream 454190 19736306 ~ 19868292 (+)
rnf138 NA other downstream 920532 20202648 ~ 20220149 (+)
G142820 NA other downstream 1500467 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 2286966 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 2316566 21598682 ~ 21611682 (+)

Expression


Co-expression Network