LOC111194339


Basic Information

Item Value
gene id LOC111194339
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20599666 ~ 20604356 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651030.1
aaacaccctgtagataaagtaaagtcagagacagaagctctgaatctgtacCTGCACAGATTACAGCGTTAATCATCCTCTAGTCTTTCATCAGtggccacaggacactgcccacagaatgCTGCCCGCAGGATGTTGTCCACAGAATGATGcccaaaggatgctgcccacaagacTCTTGCTTGAATATTTcagtGGGGAGCTTGTTGAGAACAGTTGAGAGATGTGCCCTACATTTCCCAGTCCCTCCCTCTCAATGGGaccagaagagaaaaaaaaaacagaaaggccCTAAATGTCAGAAGTGAGCGGAGGTGAAGTGAGTTTCCCCCAGCAGGGAGTTTATCCTCAGTCCCAGAGCAGCTGAGCTGATCCTGGGTCAGGTATAATGCTCTGTGAAAGCTCAATCAAGAGAAAAGCACATGAGCTGTAAATGATCATGGGGCGTGTGAATGAGGACGGGCCGGGACGCCCACCTGACCCGGCCGTTACACAGCGACAAGGCCTCATGAGCTCTACAGCAGAACTGCTCACCAAACCGGAGAAACACCTCGTAACACAGGAGACTCTTCAACACTGGTATAGCATTCGATAAGCTGTGGATGCTGGAGATCAGCATACTGCTGATGCACTAAGACCCTGTTCACACCTTGCACGAACATGCATCCTGTGTGATCTGATCATAAGTGGGCAGAACAAATTACAGGTGTGACCAGGTTACAGTACATCTCGAGGATGAATCATAATCTCACCAATCAATCTGATCACATGTAGAGATGTTCTCAATGCACTGCCCACAATAACCACAACACTGCCACTTACAAGGAGTTCTGCATCACTGGATCTTACAAAATAACCAAGATACCACACCGTCCACCATCCATGTGGGTTAGCCAATTACACTCTATCAAATGGATAAAGATGTACACATGGCTGGAGCACAAACGAAACTAGCTGTTTCATCTGGGATTGAACTGAGGACTCCATCCAAAGAAAACTGGAGGACTCTTAATGTAACTGGCCCCGCCTCCAACTCCGCCTCCAGCAGTGGAAATGATGTGATCAGAAATCAAATCTAATCAAACAGTTTCACAGGAGTTGCTAGGTgcgtggttgctaaggtggtcctaagtggttgctgaggtgttgctaggtggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651030.1 True 1158 lncRNA 0.48 3 20599666 20604356

Neighbor

gene id symbol gene type direction distance location
LOC111194338 LOC108440942,LOC108268057 coding upstream 25628 20556766 ~ 20574038 (+)
mep1b LOC108439312 coding upstream 354525 20223776 ~ 20245141 (+)
ripk1 NA coding upstream 484453 20088296 ~ 20115213 (+)
LOC111194335 NA coding upstream 1168492 19425994 ~ 19431174 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 1480136 19094766 ~ 19119530 (+)
LOC111194337 adcy1 coding downstream 7139 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 111188 20715544 ~ 20774155 (+)
LOC111194340 NA coding downstream 198944 20803300 ~ 20812844 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding downstream 284607 20888963 ~ 21008006 (+)
LOC103043942 LOC108436149 coding downstream 729390 21333746 ~ 21338732 (+)
G142788 NA non-coding upstream 19293 20576709 ~ 20580373 (+)
G142780 NA non-coding upstream 65609 20533791 ~ 20534057 (+)
G142771 NA non-coding upstream 99913 20423422 ~ 20499753 (+)
G142769 phactr1,LOC108239648,LOC107383912 non-coding upstream 165284 20409623 ~ 20434382 (+)
G142765 NA non-coding upstream 185026 20398753 ~ 20414640 (+)
G142796 NA non-coding downstream 54545 20658901 ~ 20663865 (+)
G142814 NA non-coding downstream 97330 20701686 ~ 20708499 (+)
G142823 NA non-coding downstream 194884 20799240 ~ 20799576 (+)
G142825 NA non-coding downstream 202405 20806761 ~ 20807209 (+)
G142833 NA non-coding downstream 236573 20840929 ~ 20841214 (+)
rnf138 NA other upstream 379517 20202648 ~ 20220149 (+)
G142620 NA other upstream 731374 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1706157 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 1729349 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 3395173 17203222 ~ 17204493 (+)
G142820 NA other downstream 178227 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 964726 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 994326 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 1041549 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 1206935 21811291 ~ 21908314 (+)

Expression


Co-expression Network