LOC111194352


Basic Information

Item Value
gene id LOC111194352
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 27435813 ~ 27438301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651036.1
GAATGTGGCCTTGGTAACTTTGTAGCCATGAAGAAACGACATGCCAATCATTTTCAGTGGCGATGTGAAAGAGCCAGTCACTGCAAGGGGAAGTCTACTGGAGACCCCCAAAAAACAAGAGCCAACAGTTGTGGGGCCTACGTATCTTTCACATTTGTAAACAAGAACTGTTATGATGGGTGTATTATACGACTCATGAGTGACCATTCTGGGCATGATCCTAACAGTCCCTTAGAGAGCACTGTAAATCGGATTCATCCTGGTCTCACTGACTACATTTATACCCTCATTCAGCAGGGTCACACAAATGCTGAAATACTGCTCTGTTGCAAAGACTGGTCGGACACACAGAGCCAGTCGTATCTCAAGGACAGAAGGTACCACGTAGCACCTGatgatattaattttatacGGAAAAGCTATAATGCACATACTCACATGGATTTAAATGACTGTGTTAGCGTGGACCGATTAATCAAAAGTAAGTTTAAAGATGACATCATCTACTACCAGCCTTTGTCACACTCTGAAAAGCAGGCACTCATCATTGTTTTTAGCACACCTTGGCAGAGAGATCAACTGAAGAACTATGGCTCTGACATGATATACCTTGATGCAACATATAAGGGTATTACCAGTATGGATTCGCTTTTTATGCTGTCATCATTAAGTCTTCCCAGGGTCGTGGAGTCCCAGTGGCCTTCTTCATTTTAAGTGAGGAATCTACAGAGAACCTAAGTATTTGTCTTCAAAAGCTGCAAGAGTGTGTTAATCCCTTTCAACCAAGgtGTGTCATGGTAGACAGAGATCTTAAGGAAATCAATGCAGTGCAGAAAGTGTTCCCACACACTAGAATACTGCTGTGCTGGTTTCACGTTCTTCAGGCAGTTCATCGCTGGATGCAACGCCAAGATGAATGTAAAAAGCAACCAGCTTTGAAAAATGAAGTCATCAGGGCAATGATAGCACTCAAA
>XR_002651037.1
GAATGTGGCCTTGGTAACTTTGTAGCCATGAAGAAACGACATGCCAATCATTTTCAGTGGCGATGTGAAAGAGCCAGTCACTGCAAGGGGAAGTCTACTGGAGACCCCCAAAAAACAAGAGCCAACAGTTGTGGGGCCTACGTATCTTTCACATTTGTAAACAAGAACTGTTATGATGGGTGTATTATACGACTCATGAGTGACCATTCTGGGCATGATCCTAACAGTCCCTTAGAGAGCACTGTAAATCGGATTCATCCTGGTCTCACTGACTACATTTATACCCTCATTCAGCAGGGTCACACAAATGCTGAAATACTGCTCTGTTGCAAAGACTGGTCGGACACACAGAGCCAGTCGTATCTCAAGGACAGAAGGTACCACGTAGCACCTGatgatattaattttatacGGAAAAGCTATAATGCACATACTCACATGGATTTAAATGACTGTGTTAGCGTGGACCGATTAATCAAAAGTAAGTTTAAAGATGACATCATCTACTACCAGCCTTTGTCACACTCTGAAAAGCAGGCACTCATCATTGTTTTTAGCACACCTTGGCAGAGAGATCAACTGAAGAACTATGGCTCTGACATGATATACCTTGATGCAACATATAAGGGTATTACCAGTATGGATTCGCTTTTTATGCTGTCATCATTAAGTCTTCCCAGGGTCGTGGAGTCCCAGTGGCCTTCTTCATTTTAAGTGAGGAATCTACAGAGAACCTAAGTATTTGTCTTCAAAAGCTGCAAGAGTGTGTTAATCCCTTTCAACCAAGGTAAAACTAAAAGGTCTAAAAGgtGTGTCATGGTAGACAGAGATCTTAAGGAAATCAATGCAGTGCAGAAAGTGTTCCCACACACTAGAATACTGCTGTGCTGGTTTCACGTTCTTCAGGCAGTTCATCGCTGGATGCAACGCCAAGATGAATGTAAAAAGCAACCAGCTTTGAAAAATGAAGTCATCAGGGCAATGATAGCACTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651036.1 False 974 lncRNA 0.43 3 27435813 27438301
XR_002651037.1 True 996 lncRNA 0.42 3 27435813 27438301

Neighbor

gene id symbol gene type direction distance location
LOC111194351 NA coding upstream 130138 27301866 ~ 27305675 (+)
LOC111194356 NA coding upstream 184690 27248351 ~ 27251123 (+)
ndufs2 ndufs2 coding upstream 319969 27100824 ~ 27115844 (+)
focad focad,LOC101469292,LOC104964325 coding upstream 400734 26935083 ~ 27035079 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding upstream 828622 26602015 ~ 26607191 (+)
adgra3 adgra3,LOC107691845 coding downstream 592456 28030757 ~ 28084025 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding downstream 861195 28299496 ~ 28368962 (+)
LOC103035875 LOC108437090 coding downstream 973012 28411313 ~ 28445089 (+)
LOC103035569 NA coding downstream 1019603 28457904 ~ 28475027 (+)
LOC103035264 LOC108437087 coding downstream 1058339 28496640 ~ 28564802 (+)
G144684 NA non-coding upstream 135725 27297445 ~ 27300088 (+)
G144642 NA non-coding upstream 150450 27083330 ~ 27285363 (+)
G144686 NA non-coding upstream 172530 27262250 ~ 27263283 (+)
LOC111194210 NA non-coding upstream 180161 27252358 ~ 27255652 (+)
G144617 NA non-coding upstream 618486 26817035 ~ 26817327 (+)
LOC111194353 NA non-coding downstream 105 27438406 ~ 27440052 (+)
G144833 NA non-coding downstream 216882 27655183 ~ 27657850 (+)
G144845 NA non-coding downstream 312937 27751238 ~ 27751444 (+)
G144856 NA non-coding downstream 419506 27857807 ~ 27887550 (+)
G144858 NA non-coding downstream 472395 27910696 ~ 27911127 (+)
G144671 NA other upstream 227222 27206742 ~ 27208591 (+)
G144613 NA other upstream 623686 26807716 ~ 26812127 (+)
G144584 NA other upstream 681371 26750835 ~ 26754442 (+)
G144372 NA other upstream 1646971 25786737 ~ 25788842 (+)
G144333 NA other upstream 1781563 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 1187743 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 1717424 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 1990724 29429025 ~ 29432026 (+)
G145438 NA other downstream 2739903 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 2891157 30329458 ~ 30331665 (+)

Expression


Co-expression Network