LOC103030001


Basic Information

Item Value
gene id LOC103030001
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35114176 ~ 35119163 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651057.1
tagaagggaaacatgtcAAAACCCTTGTTCACTTCATGTCTGCAtccttaaagctccactaggAGGAGGCTATTCCTGAGCTGGAGATAGATGTGGATGAGTTGTTGGACATGCAGGATGATGTTGATCGTGCTGCACGTGTTAAGGAGTTGCTGGTAGACTGTTACAAACCTACAGAAGACTTTGTATCTGAGTTGCTGGACAAAATCCGTGGGATGCAGAAACTCAGCACACCTCAGAAGAAATGATGCTGCCCCACCTTAGCCCCTCCCCCACCTCCAAACTCCTCCTACTCCTTCTCTCCCACTTCATGCTCAAGCTGCCTGCCTGTACAGAGGTGCTCCACCAGTAATCATCAGGTGGGGAGGAGATGAATGAGAATTAAATGAGGACATGTGGGGATCTAGCCAATCAGATTCTTATAAGCAGggcttattttttcattattttgttaacgttataatatttgtatttttttttttttgtaaaaggggaattttttggtgtgtttaaggATTTGTAGAAATCTGTTATGTTTCTACACATATAACTCTGCATATTTTCAGGTTTTAGGAAGCTTGTTGATTTTTCTTAGTTTGTTTTCCTCTGATGCAATACTGTGTATGTGCCCTAGTGGCCACACTCACTAGAAACTTGCTGTTTTCTTGTTAATAGACTATGCTATGATTATTACTGCGCTTTGGTGAGTTTGGAAGAGATGAGAAAGAAGCGGCCTTgtccattttttaaatgtgtttttgtttctttcatcTTGTATGTATCACATAGTTTGCAAGGGCTTTTCTAAGAAACTAGACCTTTATTTGTAGTAAAAAACAAtgggaagagaggagagaagggGGTCTGTAATTAAGGAGGGAAGAAAATTGAAGcaggagagataaaaaaaatacctcaCTCATGGCATcaaaatacatacacactgtgataaacacacatttacaatcAAGCACGACTGTCCCCACCCtttgagtgtgtaagtgtgtatatatatagttatatatctgttttaaaaggGTGTAGGAGAATTGGAAATATTACTGATCATTCAGTATCAAGATTGTGAATAAGACTGCCAGTTTATGAAGTTCTGCTGAATTAATCTATATTCTCCCTCACTGCCAATCAAGCCCCAATAACACGTAAATTAACAAGTTtactgtgtttacagtgtgtatgAGTGCATGTTAACAGTATCCACAATATGCTCATACCATATTCACATGATACTGAGATCAGGGCATCATATTGCTCACCTCTGCTTAAAGGGACCAGAAGAAATctgatacagtataataaagatGAAAGAACATCCCTTTAACTACACAGctcattgtctctctctttctctcccattGTTAGTACCACTCACTCTGTCTGGCTTTCTCTAGTCCTCAGTAGTCTCTCCATTCTATTTCCCTCCCCTTTTCCAGTACTCACCCTTTTCCAGAACAATCACACCCTTTcctcttttccctttttttataTCAGATGTTGCCTTAGGTCATATATACGTGTCACACAAACCAAATAAATCGAGGCATTCATTTGAAGAACctataaacatgtaaaaaatgaaaacttaaaaaaaatctccctGTTGTACTTTCTTACCTTCTTTTCAATTATTCTGTTTTCTAGAAATAAAGGTTGACTAGATTTAACAGACAGATTTTTAGATGCAgacattaacattttacattttttattactgtgtGTAGCGTGTACTGCATCCAACAGTGCTGTTGATCTGCTCTGTTTTCTTACAACTGCAGCACAGACAAATGTAATAAGATTAACGGAATTTAACAAGAGACAGGGTGTATTAGAAAAACATCTGTTATTAGAGTGTGATCCAAGGTCATCTTTGGAAACGAAAAAGGAATTATAAGAAGATGTAGCAATACTAAAATGTCCCGTTTGCCCAGTTTTTGTTACACTTTTGTGcaactttaataaaaatatctgaaatgcCAA

Function

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651057.1 True 1998 lncRNA 0.37 4 35114176 35119163

Neighbor

gene id symbol gene type direction distance location
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding downstream 2063 35095250 ~ 35112113 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding downstream 170519 34898804 ~ 34943657 (-)
nwd2 nwd2,LOC107661962 coding downstream 557473 34465465 ~ 34556703 (-)
LOC103030854 LOC103030854,LOC108428571 coding downstream 655763 34432831 ~ 34458413 (-)
LOC111194385 NA coding downstream 1004829 34102759 ~ 34109347 (-)
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding upstream 172005 35291168 ~ 35390551 (-)
nagk nagk,LOC107697250 coding upstream 366756 35485919 ~ 35490358 (-)
m1ap m1ap coding upstream 401565 35520728 ~ 35558142 (-)
LOC103027072 t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425 coding upstream 601623 35720786 ~ 35727200 (-)
LOC103025974 ankrd46,LOC108428588 coding upstream 609549 35728712 ~ 35732299 (-)
LOC111194386 LOC108412801,LOC108428573,LOC107669309,LOC108278882 non-coding downstream 58364 35041515 ~ 35055812 (-)
G146434 NA non-coding downstream 443329 34670437 ~ 34670847 (-)
G146431 NA non-coding downstream 476744 34637216 ~ 34637432 (-)
G146396 NA non-coding downstream 683419 34428998 ~ 34430757 (-)
G146395 rwdd4 non-coding downstream 730463 34376721 ~ 34383713 (-)
G146561 LOC108428576,LOC107721661,LOC107661090,LOC108267602,LOC107583283,LOC107744270 non-coding upstream 134568 35253731 ~ 35261277 (-)
G146559 NA non-coding upstream 150623 35269786 ~ 35288409 (-)
G146583 NA non-coding upstream 330026 35449189 ~ 35449493 (-)
G146585 NA non-coding upstream 339840 35459003 ~ 35460830 (-)
G146654 NA non-coding upstream 590279 35709442 ~ 35713313 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 737506 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 1328755 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 2008589 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 3228767 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 3555715 31550529 ~ 31558461 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 285735 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 344034 35463197 ~ 35479194 (-)
G146686 NA other upstream 764446 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 1179476 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 1547036 36666199 ~ 36706281 (-)

Expression


Co-expression Network