G42217


Basic Information

Item Value
gene id G42217
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 5391933 ~ 5392138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47907
CACGGATGTGACAAGCCTTTCAAAACGGATGCAGGGAAAATGAAGGTGCATCATCTCGCTCTCCAAATAAGCTCCCCGGTTGAGTTGAGGTGCAGAACTCCTCCGTCACACAGGAAAATGCAGAAATCTTTGGACATACCTTTTGAACACTGTATAAATTCTTCCGGCATTTCTGTCACTAGTTTTGACGTTATCATTGTGTGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47907 True 206 lncRNA 0.45 1 5391933 5392138

Neighbor

gene id symbol gene type direction distance location
CI01000006_05276965_05313266 NA coding upstream 77703 5276756 ~ 5314230 (+)
CI01000006_05196006_05199842 NA coding upstream 191354 5195332 ~ 5200579 (+)
CI01000006_05169144_05174432 NA coding upstream 216630 5168117 ~ 5175303 (+)
CI01000006_04989318_04992332 SC5D coding upstream 399092 4989318 ~ 4992841 (+)
CI01000006_04931074_04985139 ARHGAP32, ARHGAP32B coding upstream 405760 4931074 ~ 4986173 (+)
CI01000006_05469329_05478118 NA coding downstream 76879 5469017 ~ 5478629 (+)
CI01000006_05617900_05693346 NCAM1, NCAM1A coding downstream 225762 5617900 ~ 5693346 (+)
CI01000006_05719079_05723838 NA coding downstream 326941 5719079 ~ 5724165 (+)
CI01000006_05729706_05734532 NA coding downstream 337130 5729268 ~ 5734668 (+)
CI01000006_05739275_05746584 NA coding downstream 346670 5738808 ~ 5747186 (+)
G42197 NA non-coding upstream 52012 5339721 ~ 5339921 (+)
G42183 NA non-coding upstream 76975 5314703 ~ 5314958 (+)
G42181 NA non-coding upstream 79294 5312032 ~ 5312639 (+)
G42002 NA non-coding upstream 352622 4969655 ~ 5039311 (+)
CI01000006_04703916_04717922 NA non-coding upstream 674159 4702871 ~ 4718123 (+)
G42220 NA non-coding downstream 2781 5394919 ~ 5395288 (+)
G42223 NA non-coding downstream 5292 5397430 ~ 5397705 (+)
G42224 NA non-coding downstream 5640 5397778 ~ 5398141 (+)
G43933 NA non-coding downstream 35712 5427850 ~ 5428084 (+)
G43934 NA non-coding downstream 35962 5428100 ~ 5428318 (+)
G41996 NA other upstream 267784 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 1655955 3734554 ~ 3736035 (+)
G41591 NA other upstream 2552512 2836167 ~ 2839421 (+)
G41424 NA other upstream 2731363 2645662 ~ 2660570 (+)
G41170 NA other upstream 3696112 1692065 ~ 1695821 (+)
G43896 NA other downstream 377951 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 716346 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 729897 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 1774651 7166778 ~ 7168925 (+)
G44872 NA other downstream 1964214 7356352 ~ 7387884 (+)

Expression


Co-expression Network